Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

65176239 .. 65178306

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG381800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCCTGGAACTGCTTTTGTTGCGTCTCTCAGGAAGAGGATCAGCCAGAGACCCCCAGGTACGTACATATATGCTTAGATCTATATACTAGATCAAATGGTACTGAGATAGCAGTGAAACGACTAAAGACCATGAGCGCAAAGGCCGAGATGGAGTTTGCGGTGGAAGTTGAGATACTAGGGAGGGTGAGACATAGAAATTTGTTAGGGCTGCGTGGATTCTACGCCGGAGGTGATGAAAGACTAATAGTGTATGATTTCATGCCTAATCATAGCCTGATCACCCATTTACATGGCCAACTTGCAAATGATTGTCTTCTTGATTGGCCAAGAAGAATGAGCATCATCATTGGAGCGGCTGATGGCTTATCGTACCTGCACCATGAGGCCAATCCTCATATAATACACAGAGACATAAAGGCAAGCAATGTGCTTCTAGACATTGATTTTCAAGCAAAAGTTGCTGATTTTGGATTTGCAAAGCTGATTCCGGAGGGTGTGAGTCATCTGACTACTAGAGTGAAAGGAACTCTTGGATATTTAGCTCCTGAATATGCTATGTGGGGAAAAGTTTCAGAAAGTTGTGATGTTTATAGCTTTGGTATCTTGCTTTTAGAAATAATTAGCGGAAGAAAGCCAATAGAGAAACTCCCTGGCGGAGTGAAACGTGACATTGTGCAATGGGCAACCCCTTATGTCCAAAAGGGTGCATATAATCACATTGCAGATCCAAAGTTGAAGGGCAAGTTCGACCGCGAACAAGTGAAGTCCACTATCATGATTGCGATGAAATGTACCGATAACAGCCCCGAGAATCGACCCACAATGAAAGAAGTAGTGGATTGGCTTAAGGGGGGAATGGGAACAAGGAAGAAAGATTTAACAAATGTGGGAGGCATCGAGGATGATGAAAATGAAGAAAACGACGGAAATGATACCGATTTTGAAGGGTACGAGATGGAGGTTTCTGATACCAAAAAGAATATAACAAAGGCTAAATCACAAAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

38.07

Weight (kDa)

6.15

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 280	4.1e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 281	1e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccBSI	CCGCTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	5 cut(s)	161, 356, 627, 657, 754
AclWI	GGATC	2 cut(s)	48, 722
AcoI	YGGCCR	2 cut(s)	295, 326
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	6 cut(s)	62, 66, 103, 374, 796, 953
AflII	CTTAAG	1 cut(s)	848
AgsI	TTSAA	3 cut(s)	452, 739, 947
AjnI	CCWGG	3 cut(s)	5, 56, 652
AluBI	AGCT	3 cut(s)	484, 545, 597
AluI	AGCT	3 cut(s)	484, 545, 597
Alw26I	GTCTC	4 cut(s)	31, 44, 184, 405
AlwI	GGATC	2 cut(s)	48, 722
Ama87I	CYCGRG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	4 cut(s)	144, 295, 326, 387
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	199, 245, 274
AvaI	CYCGRG	1 cut(s)	809
BalI	TGGCCA	2 cut(s)	297, 328
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	3 cut(s)	145, 356, 952
BciT130I	CCWGG	3 cut(s)	7, 58, 654
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	4 cut(s)	31, 44, 184, 405
BfaI	CTAG	4 cut(s)	90, 179, 437, 516
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	212, 357
BlsI	GCNGC	2 cut(s)	213, 358
Bme1390I	CCNGG	3 cut(s)	7, 58, 654
BmeT110I	CYCGRG	1 cut(s)	809
BmrFI	CCNGG	3 cut(s)	7, 58, 654
BmsI	GCATC	2 cut(s)	351, 906
BpiI	GAAGAC	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	5, 56, 652
BsaWI	WCCGGW	1 cut(s)	490
Bse3DI	GCAATG	3 cut(s)	433, 686, 720
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	3 cut(s)	7, 58, 654
BseDI	CCNNGG	3 cut(s)	5, 56, 652
BseGI	GGATG	1 cut(s)	910
BseMI	GCAATG	3 cut(s)	433, 686, 720
BseMII	CTCAG	2 cut(s)	44, 96
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	756
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	4 cut(s)	146, 297, 328, 389
BsiEI	CGRYCG	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	2 cut(s)	228, 491
BsmAI	GTCTC	4 cut(s)	31, 44, 184, 405
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	146, 297, 328, 389
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	809
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	40, 79, 92, 279, 727
BspACI	CCGC	5 cut(s)	161, 356, 627, 657, 754
BspANI	GGCC	4 cut(s)	146, 297, 328, 389
BspCNI	CTCAG	2 cut(s)	43, 97
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	48, 722
BspTI	CTTAAG	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	356
BsrDI	GCAATG	3 cut(s)	433, 686, 720
BssECI	CCNNGG	3 cut(s)	5, 56, 652
BssMI	GATC	5 cut(s)	40, 79, 92, 279, 727
Bst2UI	CCWGG	3 cut(s)	7, 58, 654
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	848
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	30, 76, 105
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	43, 82, 95, 282, 730
BstMAI	GTCTC	4 cut(s)	31, 44, 184, 405
BstMBI	GATC	5 cut(s)	40, 79, 92, 279, 727
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 461
BstNI	CCWGG	3 cut(s)	7, 58, 654
BstSCI	CCNGG	3 cut(s)	5, 56, 652
BstSNI	TACGTA	1 cut(s)	64
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	79, 727
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	79, 727
BsuRI	GGCC	4 cut(s)	146, 297, 328, 389
BtgZI	GCGATG	1 cut(s)	800
BtsCI	GGATG	1 cut(s)	910
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	140
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	6 cut(s)	61, 65, 102, 373, 795, 952
CviAII	CATG	5 cut(s)	133, 262, 293, 383, 778
CviQI	GTAC	6 cut(s)	61, 65, 102, 373, 795, 952
DdeI	CTNAG	3 cut(s)	30, 76, 105
DpnI	GATC	5 cut(s)	42, 81, 94, 281, 729
DpnII	GATC	5 cut(s)	40, 79, 92, 279, 727
EaeI	YGGCCR	2 cut(s)	295, 326
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	672
Eco105I	TACGTA	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	809
EcoRII	CCWGG	3 cut(s)	5, 56, 652
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	5 cut(s)	136, 265, 296, 386, 781
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	5 cut(s)	132, 261, 292, 382, 777
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	212, 357
FokI	GGATG	1 cut(s)	917
Fsp4HI	GCNGC	2 cut(s)	212, 357
FspBI	CTAG	4 cut(s)	90, 179, 437, 516
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	212, 357
HaeIII	GGCC	4 cut(s)	146, 297, 328, 389
HapII	CCGG	2 cut(s)	228, 491
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	136, 265, 296, 386, 781
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	4 cut(s)	219, 487, 502, 814
HpaII	CCGG	2 cut(s)	228, 491
HphI	GGTGA	3 cut(s)	199, 245, 274
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	3 cut(s)	510, 577, 970
Hpy188III	TCNNGA	6 cut(s)	32, 320, 437, 491, 548, 778
Hpy8I	GTNNAC	1 cut(s)	771
Hpy99I	CGWCG	1 cut(s)	929
HpyAV	CCTTC	2 cut(s)	733, 941
HpyCH4IV	ACGT	2 cut(s)	63, 667
HpyCH4V	TGCA	6 cut(s)	305, 379, 479, 679, 710, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 461
HpyF3I	CTNAG	3 cut(s)	30, 76, 105
HpySE526I	ACGT	2 cut(s)	63, 667
Hsp92II	CATG	5 cut(s)	136, 265, 296, 386, 781
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	40, 79, 92, 279, 727
LmnI	GCTCC	2 cut(s)	353, 550
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	351, 906
MaeI	CTAG	4 cut(s)	90, 179, 437, 516
MaeII	ACGT	2 cut(s)	63, 667
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	5 cut(s)	42, 81, 94, 281, 729
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	5 cut(s)	40, 79, 92, 279, 727
MboII	GAAGA	6 cut(s)	47, 308, 345, 642, 883, 929
MflI	RGATCY	2 cut(s)	79, 727
MlsI	TGGCCA	2 cut(s)	297, 328
MluCI	AATT	2 cut(s)	199, 621
MluNI	TGGCCA	2 cut(s)	297, 328
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	9 cut(s)	31, 177, 224, 379, 405, 487, 887, 895, 955
Mox20I	TGGCCA	2 cut(s)	297, 328
MroI	TCCGGA	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	571
MscI	TGGCCA	2 cut(s)	297, 328
MseI	TTAA	2 cut(s)	849, 881
MslI	CAYNNNNRTG	2 cut(s)	291, 776
Msp20I	TGGCCA	2 cut(s)	297, 328
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	2 cut(s)	228, 491
MspR9I	CCNGG	3 cut(s)	7, 58, 654
MvaI	CCWGG	3 cut(s)	7, 58, 654
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	21, 461
NdeII	GATC	5 cut(s)	40, 79, 92, 279, 727
NlaIII	CATG	5 cut(s)	136, 265, 296, 386, 781
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	668
PagI	TCATGA	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	219, 487, 814
PkrI	GCNGC	2 cut(s)	213, 358
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	5, 56, 652
PspGI	CCWGG	3 cut(s)	5, 56, 652
PsuI	RGATCY	2 cut(s)	79, 727
RsaI	GTAC	6 cut(s)	62, 66, 103, 374, 796, 953
RsaNI	GTAC	6 cut(s)	61, 65, 102, 373, 795, 952
RseI	CAYNNNNRTG	2 cut(s)	291, 776
SaqAI	TTAA	2 cut(s)	849, 881
SatI	GCNGC	2 cut(s)	212, 357
Sau3AI	GATC	5 cut(s)	40, 79, 92, 279, 727
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	3 cut(s)	7, 58, 654
SetI	ASST	9 cut(s)	62, 66, 235, 378, 486, 547, 599, 670, 966
SfaNI	GCATC	2 cut(s)	351, 906
SmiMI	CAYNNNNRTG	2 cut(s)	291, 776
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	2 cut(s)	199, 621
SsiI	CCGC	5 cut(s)	161, 356, 627, 657, 754
SspMI	CTAG	4 cut(s)	90, 179, 437, 516
StyD4I	CCNGG	3 cut(s)	5, 56, 652
TaiI	ACGT	2 cut(s)	66, 670
TaqI	TCGA	3 cut(s)	750, 817, 900
TasI	AATT	2 cut(s)	199, 621
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	219, 487, 814
Tru1I	TTAA	2 cut(s)	849, 881
Tru9I	TTAA	2 cut(s)	849, 881
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	6 cut(s)	250, 252, 803, 842, 924, 930
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	848
XapI	RAATTY	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	4 cut(s)	90, 179, 437, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.