Rh1DG018500

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
N/A
Physical Location & Seq
Forward (+)
3027709 .. 3029760
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG018500.1

Sequence Viewer

Length: 816 bp
ATGAAAAATCTAAGATTGTTGAAAATTTACAATGTGATATTTTCTGGATGCCTTGAATTTCTTTCAAATGAGTTAAGCTTCTTGGAATGGCACAGATATCCTTTAAAATATCTGCCTTCATGTTTTAAACCTGATAAACTCGTTGAACTGAATTTGTATCGGAGTCAAATAGAGCAATTGTGGGAGGAAATTGAGAGGGGTGCAATTCTTCGAGGTAGCAATTTTAAATATAGCTATGTATCAAATGATATTCCTGCATGGTTGAGCCGTCGAAGTACTGGATCATCTATAACAATCCCGCTCCCTCTGGATTTAGATGGTAACGGTAAATGGATGGGATTTGCTCTGTGTTTTACTTGTGTAGCGCAACATCATGATTCTCTGGATACAACACATGTCTTCCTTGATGACCAAGAGCAATTAAACCTTAGTCGCAATTACCGTATTCATTTCTATACCACGGAAGATCCTCTTGAACGTCCCCTAGTGCATAATTACCCTGATTGCGATTGGGCTGGATCATTTATGTACTGGAACTATGCACCAAGAAGTAATTTTGTAGAAATTTCGAATAAACGCTTCATCCGAGCTACAATTGTACCAGGAAGCCCAGGGGTGGAGGTGACAAGGTGTGCGGCGAGCCTAATATACTTGGAAGAAGTGGCAGAATTTGTCCGAAAAATGAATATTCACCATGACAATTGCGATAAAGGTTATAGGTGGATTCAATGGGAAGTAGTCCTTCGACGGGCAGGATTCAAACTAAACCAGAAATACAAGAACAAGAAACTAATAGTACTTCAGCCAGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

271

Amino Acids

31.86

Weight (kDa)

8.39

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 81 - 221 1.9e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 301
AciI CCGC 2 cut(s) 299, 635
AclWI GGATC 3 cut(s) 289, 461, 526
AcsI RAATTY 5 cut(s) 24, 56, 151, 564, 668
AcuI CTGAAG 1 cut(s) 785
AfaI GTAC 4 cut(s) 277, 530, 600, 798
AfiI CCNNNNNNNGG 2 cut(s) 616, 748
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 7 cut(s) 22, 56, 66, 146, 476, 728, 760
AjnI CCWGG 3 cut(s) 601, 610, 805
AluBI AGCT 3 cut(s) 78, 234, 590
AluI AGCT 3 cut(s) 78, 234, 590
AlwI GGATC 3 cut(s) 289, 461, 526
ApoI RAATTY 5 cut(s) 24, 56, 151, 564, 668
AspLEI GCGC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 634, 683
AsuII TTCGAA 1 cut(s) 569
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BbsI GAAGAC 1 cut(s) 391
BccI CCATC 2 cut(s) 311, 328
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 3 cut(s) 603, 612, 807
BciVI GTATCC 1 cut(s) 379
BfaI CTAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
BmcAI AGTACT 2 cut(s) 277, 798
Bme1390I CCNGG 3 cut(s) 603, 612, 807
BmrFI CCNGG 3 cut(s) 603, 612, 807
BmsI GCATC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 459, 610, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 748
Bse1I ACTGG 2 cut(s) 283, 536
BseBI CCWGG 3 cut(s) 603, 612, 807
BseDI CCNNGG 3 cut(s) 459, 610, 611
BseGI GGATG 3 cut(s) 53, 339, 582
BseLI CCNNNNNNNGG 2 cut(s) 616, 748
BseNI ACTGG 2 cut(s) 283, 536
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 616, 748
BsmFI GGGAC 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 569
Bsp143I GATC 3 cut(s) 281, 466, 518
BspACI CCGC 2 cut(s) 299, 635
BspHI TCATGA 1 cut(s) 373
BspPI GGATC 3 cut(s) 289, 461, 526
BspT104I TTCGAA 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 283, 536
BssECI CCNNGG 3 cut(s) 459, 610, 611
BssMI GATC 3 cut(s) 281, 466, 518
Bst2UI CCWGG 3 cut(s) 603, 612, 807
Bst4CI ACNGT 2 cut(s) 326, 443
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 2 cut(s) 11, 428
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 53, 339, 582
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 3 cut(s) 284, 469, 521
BstMBI GATC 3 cut(s) 281, 466, 518
BstNI CCWGG 3 cut(s) 603, 612, 807
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 601, 610, 805
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 53, 339, 582
Cac8I GCNNGC 1 cut(s) 640
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 367
Csp6I GTAC 4 cut(s) 276, 529, 599, 797
CviAII CATG 5 cut(s) 120, 258, 374, 395, 695
CviJI RGCY 9 cut(s) 78, 234, 267, 515, 590, 609, 642, 805, 810
CviKI_1 RGCY 9 cut(s) 78, 234, 267, 515, 590, 609, 642, 805, 810
CviQI GTAC 4 cut(s) 276, 529, 599, 797
DdeI CTNAG 2 cut(s) 11, 428
DpnI GATC 3 cut(s) 283, 468, 520
DpnII GATC 3 cut(s) 281, 466, 518
DraI TTTAAA 3 cut(s) 105, 127, 226
Eco32I GATATC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 785
EcoRII CCWGG 3 cut(s) 601, 610, 805
EcoRV GATATC 1 cut(s) 98
FaeI CATG 5 cut(s) 123, 261, 377, 398, 698
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 726, 758
FaqI GGGAC 1 cut(s) 465
FatI CATG 5 cut(s) 119, 257, 373, 394, 694
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 3 cut(s) 60, 346, 569
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 636
HhaI GCGC 1 cut(s) 367
Hin1II CATG 5 cut(s) 123, 261, 377, 398, 698
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 4 cut(s) 163, 377, 724, 756
HphI GGTGA 2 cut(s) 634, 683
Hpy188I TCNGA 3 cut(s) 162, 587, 677
Hpy188III TCNNGA 5 cut(s) 45, 308, 374, 383, 473
Hpy99I CGWCG 2 cut(s) 273, 750
HpyAV CCTTC 2 cut(s) 126, 752
HpyCH4III ACNGT 2 cut(s) 326, 443
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 203, 257, 490, 542
HpyF3I CTNAG 2 cut(s) 11, 428
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 5 cut(s) 123, 261, 377, 398, 698
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 3 cut(s) 281, 466, 518
LmnI GCTCC 1 cut(s) 306
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 2 cut(s) 320, 622
MalI GATC 3 cut(s) 283, 468, 520
MbiI CCGCTC 1 cut(s) 301
MboI GATC 3 cut(s) 281, 466, 518
MboII GAAGA 4 cut(s) 200, 391, 476, 668
MfeI CAATTG 3 cut(s) 176, 594, 700
MflI RGATCY 1 cut(s) 466
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 6 cut(s) 178, 189, 206, 315, 480, 613
MseI TTAA 5 cut(s) 74, 104, 126, 225, 422
MspR9I CCNGG 3 cut(s) 603, 612, 807
MunI CAATTG 3 cut(s) 176, 594, 700
MvaI CCWGG 3 cut(s) 603, 612, 807
NdeII GATC 3 cut(s) 281, 466, 518
NlaIII CATG 5 cut(s) 123, 261, 377, 398, 698
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 398
NspV TTCGAA 1 cut(s) 569
PagI TCATGA 1 cut(s) 373
PasI CCCWGGG 1 cut(s) 611
PciI ACATGT 1 cut(s) 394
PcsI WCGNNNNNNNCGW 2 cut(s) 439, 583
PfeI GAWTC 3 cut(s) 377, 724, 756
PkrI GCNGC 1 cut(s) 637
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PscI ACATGT 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 601, 610, 805
PspGI CCWGG 3 cut(s) 601, 610, 805
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 4 cut(s) 277, 530, 600, 798
RsaNI GTAC 4 cut(s) 276, 529, 599, 797
SaqAI TTAA 5 cut(s) 74, 104, 126, 225, 422
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 3 cut(s) 281, 466, 518
ScaI AGTACT 2 cut(s) 277, 798
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 3 cut(s) 603, 612, 807
SfaNI GCATC 1 cut(s) 38
SfuI TTCGAA 1 cut(s) 569
SsiI CCGC 2 cut(s) 299, 635
SspI AATATT 1 cut(s) 688
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 601, 610, 805
TaaI ACNGT 2 cut(s) 326, 443
TaiI ACGT 1 cut(s) 481
TaqI TCGA 4 cut(s) 211, 271, 569, 745
TatI WGTACW 3 cut(s) 275, 528, 796
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 3 cut(s) 377, 724, 756
Tru1I TTAA 5 cut(s) 74, 104, 126, 225, 422
Tru9I TTAA 5 cut(s) 74, 104, 126, 225, 422
TseFI GTSAC 1 cut(s) 622
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 5 cut(s) 17, 108, 437, 571, 698
TspGWI ACGGA 1 cut(s) 476
XapI RAATTY 5 cut(s) 24, 56, 151, 564, 668
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 2 cut(s) 277, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.