Rh1DG083100

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
N/A
Physical Location & Seq
Reverse (-)
15228625 .. 15230269
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG083100.1

Sequence Viewer

Length: 915 bp
ATGAGCTCCCAATTTGAAACCACTGTCGACAGTGACCAGAAATCTTTCAATTCCGCAATCAACGGGGCCGTTGCTGCTTCTGTTTTTTCTACTGTGGTACTGATCATTGCTGTTACAGCCATTATATGTGCCATTATTAACTGCGTGCAAAAGTCTGGAAATTCTATTCCAATTTCTGCCAAGATAAGTAGTAGCAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACGTGTTCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGGGTTTCTAAGCAACATGGCAAGAGAGAAGCCTATAACTTACTCAGCGAAGCAAATTGCAGAATTCACACATAACTATAGCTACTCTAACATATTAGGTTCAGGCGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACGAACAACAACAGGGCTAAGCTAGTTGAAGAGCAGTTTATGGCAGAAATTGTTGGAAGAAGAAGACACTGCGACGATAATGTGAGCGAGTCTCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCGAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACGACACTAGTACTTCGGCATCAGCCACAATGATTGATCCACACCCTAGTGTGGCACATGAAATTGAGCTAGTTGTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

304

Amino Acids

33.55

Weight (kDa)

5.44

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 2 cut(s) 54, 399
AclWI GGATC 2 cut(s) 638, 863
AcsI RAATTY 3 cut(s) 160, 356, 805
AfaI GTAC 3 cut(s) 99, 441, 844
AfiI CCNNNNNNNGG 1 cut(s) 883
AflIII ACRYGT 2 cut(s) 241, 585
AgsI TTSAA 5 cut(s) 17, 49, 248, 491, 782
AhlI ACTAGT 1 cut(s) 839
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 879
AluBI AGCT 6 cut(s) 6, 260, 375, 484, 677, 901
AluI AGCT 6 cut(s) 6, 260, 375, 484, 677, 901
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 5 cut(s) 232, 552, 558, 636, 703
AlwI GGATC 2 cut(s) 638, 863
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 74, 608
ApoI RAATTY 3 cut(s) 160, 356, 805
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 66, 457
AsuHPI GGTGA 1 cut(s) 690
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 61, 620
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 5 cut(s) 232, 552, 558, 636, 703
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 4 cut(s) 485, 840, 879, 902
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 2 cut(s) 75, 609
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 2 cut(s) 76, 610
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 555
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 66, 457
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 532
BplI GAGNNNNNCTC 2 cut(s) 538, 570
Bpu1102I GCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 429, 459, 751, 781
Bsc4I CCNNNNNNNGG 1 cut(s) 883
Bse1I ACTGG 2 cut(s) 254, 566
Bse3DI GCAATG 2 cut(s) 105, 730
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 883
BseMI GCAATG 2 cut(s) 105, 730
BseMII CTCAG 2 cut(s) 267, 351
BseNI ACTGG 2 cut(s) 254, 566
BseXI GCAGC 2 cut(s) 61, 620
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 555
BslI CCNNNNNNNGG 1 cut(s) 883
BsmAI GTCTC 5 cut(s) 232, 552, 558, 636, 703
BsmBI CGTCTC 1 cut(s) 232
BsmI GAATGC 2 cut(s) 687, 694
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 703
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 102, 630, 868
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 2 cut(s) 54, 399
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 268, 350
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 2 cut(s) 638, 863
BspQI GCTCTTC 1 cut(s) 486
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 2 cut(s) 105, 730
BsrI ACTGG 2 cut(s) 254, 566
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 3 cut(s) 102, 630, 868
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 25, 32, 94
Bst6I CTCTTC 2 cut(s) 486, 630
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 6 cut(s) 276, 302, 337, 480, 570, 604
BstF5I GGATG 1 cut(s) 669
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 3 cut(s) 105, 633, 871
BstMAI GTCTC 5 cut(s) 232, 552, 558, 636, 703
BstMBI GATC 3 cut(s) 102, 630, 868
BstMWI GCNNNNNNNGC 2 cut(s) 74, 116
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 61, 620
BstV2I GAAGAC 1 cut(s) 532
BsuRI GGCC 1 cut(s) 68
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 669
BtsI GCAGTG 2 cut(s) 234, 529
BtsIMutI CAGTG 4 cut(s) 21, 37, 234, 529
Cac8I GCNNGC 1 cut(s) 146
CciI TCATGA 1 cut(s) 717
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 66, 457
Csp6I GTAC 3 cut(s) 98, 440, 843
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 5 cut(s) 310, 579, 586, 718, 890
CviQI GTAC 3 cut(s) 98, 440, 843
DdeI CTNAG 6 cut(s) 276, 302, 337, 480, 570, 604
DpnI GATC 3 cut(s) 104, 632, 870
DpnII GATC 3 cut(s) 102, 630, 868
Eam1104I CTCTTC 2 cut(s) 486, 630
EarI CTCTTC 2 cut(s) 486, 630
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 5 cut(s) 313, 582, 589, 721, 893
FatI CATG 5 cut(s) 309, 578, 585, 717, 889
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 75, 609
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 75, 609
FspBI CTAG 4 cut(s) 485, 840, 879, 902
GlaI GCGC 1 cut(s) 623
GluI GCNGC 2 cut(s) 75, 609
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 1 cut(s) 624
Hin1II CATG 5 cut(s) 313, 582, 589, 721, 893
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 3 cut(s) 209, 266, 551
HphI GGTGA 1 cut(s) 690
Hpy166II GTNNAC 3 cut(s) 28, 232, 576
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 5 cut(s) 156, 428, 555, 557, 718
Hpy8I GTNNAC 3 cut(s) 28, 232, 576
Hpy99I CGWCG 1 cut(s) 539
HpyCH4III ACNGT 3 cut(s) 25, 32, 94
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 148, 353, 687, 733, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 116
HpyF3I CTNAG 6 cut(s) 276, 302, 337, 480, 570, 604
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 5 cut(s) 313, 582, 589, 721, 893
HspAI GCGC 1 cut(s) 622
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 102, 630, 868
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 2 cut(s) 61, 620
LweI GCATC 1 cut(s) 860
MaeI CTAG 4 cut(s) 485, 840, 879, 902
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 32, 112
MalI GATC 3 cut(s) 104, 632, 870
MboI GATC 3 cut(s) 102, 630, 868
MboII GAAGA 5 cut(s) 503, 531, 534, 537, 647
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 4 cut(s) 237, 308, 496, 720
MnlI CCTC 4 cut(s) 654, 723, 736, 777
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 138, 668
MslI CAYNNNNRTG 1 cut(s) 879
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 2 cut(s) 687, 694
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 74, 116
NdeII GATC 3 cut(s) 102, 630, 868
NlaIII CATG 5 cut(s) 313, 582, 589, 721, 893
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 589
OliI CACNNNNGTG 1 cut(s) 879
PaeR7I CTCGAG 1 cut(s) 555
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 2 cut(s) 687, 694
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 209, 266
PkrI GCNGC 2 cut(s) 76, 610
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 457
PscI ACATGT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 66, 457
PspPPI RGGWCCY 1 cut(s) 457
RsaI GTAC 3 cut(s) 99, 441, 844
RsaNI GTAC 3 cut(s) 98, 440, 843
RseI CAYNNNNRTG 1 cut(s) 879
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 138, 668
SatI GCNGC 2 cut(s) 75, 609
Sau3AI GATC 3 cut(s) 102, 630, 868
Sau96I GGNCC 2 cut(s) 66, 457
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 860
SfcI CTRYAG 1 cut(s) 370
Sfr274I CTCGAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 457
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 2 cut(s) 235, 555
SmoI CTYRAG 2 cut(s) 235, 555
SpeI ACTAGT 1 cut(s) 839
SsiI CCGC 2 cut(s) 54, 399
SspMI CTAG 4 cut(s) 485, 840, 879, 902
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 3 cut(s) 25, 32, 94
TaiI ACGT 1 cut(s) 244
TaqI TCGA 5 cut(s) 27, 429, 556, 633, 909
TatI WGTACW 2 cut(s) 439, 842
TfiI GAWTC 2 cut(s) 209, 266
Tru1I TTAA 2 cut(s) 138, 668
Tru9I TTAA 2 cut(s) 138, 668
TscAI CASTG 4 cut(s) 28, 37, 234, 536
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 74, 608
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 906
TspRI CASTG 4 cut(s) 28, 37, 234, 536
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 3 cut(s) 160, 356, 805
XceI RCATGY 1 cut(s) 589
XhoI CTCGAG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 4 cut(s) 485, 840, 879, 902
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.