Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37012529 .. 37013337

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAAAACCAGGAAAGCCGGGAGGAAATCCAGCTGCAAATGCTGCCTGGACTGCTATTCAGAGGGCCACTTTTGGAGGATAGGATCGAACGTGTCCTCTTATGTGGGAATGGTGTCTGAGACACTGAGGAATACAATTCACTGTCAAGGTAAGCAGTTGGGTCAACTGCTTGATGAAGACCCGGCATTGATGGAGAGGAGGCCACAGTGTGCTAAAAGGCTTGAATTATACAAGTCAGCCAGGGAAGAGGTTGATTCTGTATCATGGGTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

9.02

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	51 - 87	3.5e-07	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	91
AdeI	CACNNNGTG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	3 cut(s)	8, 45, 239
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	64, 200
ApeKI	GCWGC	2 cut(s)	33, 42
AspS9I	GGNCC	2 cut(s)	64, 268
AsuC2I	CCSGG	2 cut(s)	19, 182
AvaII	GGWCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	20, 29
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	3 cut(s)	10, 47, 241
BcnI	CCSGG	2 cut(s)	19, 182
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	34, 43
BlsI	GCNGC	2 cut(s)	35, 44
Bme1390I	CCNGG	5 cut(s)	10, 19, 47, 182, 241
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	64, 268
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	5 cut(s)	10, 19, 47, 182, 241
BpiI	GAAGAC	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	19, 182
BsaJI	CCNNGG	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	10, 47, 241
BseDI	CCNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	108, 116
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	20, 29
BshFI	GGCC	2 cut(s)	66, 202
BsiSI	CCGG	2 cut(s)	18, 182
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	66, 202
Bsp143I	GATC	1 cut(s)	83
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	66, 202
BspCNI	CTCAG	2 cut(s)	109, 117
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	83
Bst2UI	CCWGG	3 cut(s)	10, 47, 241
Bst4CI	ACNGT	2 cut(s)	143, 207
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	117, 125
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 42, 51
BstNI	CCWGG	3 cut(s)	10, 47, 241
BstSCI	CCNGG	5 cut(s)	8, 17, 45, 180, 239
BstV1I	GCAGC	2 cut(s)	20, 29
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	66, 202
BtsIMutI	CAGTG	3 cut(s)	122, 139, 212
Cfr13I	GGNCC	2 cut(s)	64, 268
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	6 cut(s)	17, 33, 66, 202, 220, 239
CviKI_1	RGCY	6 cut(s)	17, 33, 66, 202, 220, 239
DdeI	CTNAG	2 cut(s)	117, 125
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	8, 45, 239
FaeI	CATG	1 cut(s)	267
FaiI	YATR	3 cut(s)	102, 229, 265
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	34, 43
Fsp4HI	GCNGC	2 cut(s)	34, 43
GluI	GCNGC	2 cut(s)	34, 43
HaeIII	GGCC	2 cut(s)	66, 202
HapII	CCGG	2 cut(s)	18, 182
Hin1II	CATG	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	18, 182
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	61, 118
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	143, 207
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 42, 51
HpyF3I	CTNAG	2 cut(s)	117, 125
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	22, 31, 32, 43, 59, 195, 226, 253
Lsp1109I	GCAGC	2 cut(s)	20, 29
MaeII	ACGT	1 cut(s)	90
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	2 cut(s)	188, 257
MluCI	AATT	2 cut(s)	135, 224
MnlI	CCTC	8 cut(s)	15, 55, 69, 106, 120, 189, 192, 241
MspA1I	CMGCKG	2 cut(s)	33, 273
MspI	CCGG	2 cut(s)	18, 182
MspR9I	CCNGG	5 cut(s)	10, 19, 47, 182, 241
MvaI	CCWGG	3 cut(s)	10, 47, 241
MwoI	GCNNNNNNNGC	3 cut(s)	39, 42, 51
NciI	CCSGG	2 cut(s)	19, 182
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	35, 44
Psp6I	CCWGG	3 cut(s)	8, 45, 239
PspGI	CCWGG	3 cut(s)	8, 45, 239
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	64, 268
PvuII	CAGCTG	1 cut(s)	33
SatI	GCNGC	2 cut(s)	34, 43
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	2 cut(s)	64, 268
ScrFI	CCNGG	5 cut(s)	10, 19, 47, 182, 241
SetI	ASST	4 cut(s)	35, 93, 151, 252
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	135, 224
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	5 cut(s)	8, 17, 45, 180, 239
TaaI	ACNGT	2 cut(s)	143, 207
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	135, 224
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	3 cut(s)	129, 146, 212
TseI	GCWGC	2 cut(s)	33, 42
TspDTI	ATGAA	2 cut(s)	17, 189
TspRI	CASTG	3 cut(s)	129, 146, 212
VpaK11BI	GGWCC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.