Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50864634 .. 50871995

Gene Structure 7362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCAGGAGTAGAAGAGAGTCATGCAATTGGGATTGATCTGGGGACAACCTACTCTTGTGTGGCTTTATGGCAGCATGATCGTGTAGAAATTATAGTGAATGATCAGGGAAACCGGACCACTCCATCTCATGTTGCTTTCACTGATACTGAGCGCTTGATTGGTCAAGCGGCACTTAACCAGATCACCAGTAACCCGACCAGCAACTCCATCTTTGGTCTATATGGTGACTTGATTGCCAGTTTTCTCTGGAAATTTGATTCCAGCTTCCTCCAAAGTTGGGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 Retrotran_gag_2

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

4.58

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 71	9.1e-24	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	178, 239
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	133, 218
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BclI	TGATCA	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	2 cut(s)	74, 171
BlsI	GCNGC	2 cut(s)	75, 172
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	189, 240
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	189, 240
BseXI	GCAGC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	37, 79, 103, 183
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	189, 240
BssMI	GATC	4 cut(s)	37, 79, 103, 183
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	40, 82, 106, 186
BstMBI	GATC	4 cut(s)	37, 79, 103, 183
BstV1I	GCAGC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	3 cut(s)	23, 77, 131
CviJI	RGCY	2 cut(s)	65, 267
CviKI_1	RGCY	2 cut(s)	65, 267
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	39, 81, 105, 185
DpnII	GATC	4 cut(s)	37, 79, 103, 183
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	155
FaeI	CATG	3 cut(s)	26, 80, 134
FaiI	YATR	7 cut(s)	24, 70, 78, 95, 132, 223, 225
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	22, 76, 130
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	74, 171
Fsp4HI	GCNGC	2 cut(s)	74, 171
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	74, 171
HaeII	RGCGCY	1 cut(s)	157
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	26, 80, 134
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	19, 260
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	2 cut(s)	178, 239
Hpy188III	TCNNGA	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	26, 80, 134
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	37, 79, 103, 183
LpnPI	CCDG	9 cut(s)	26, 92, 128, 194, 202, 214, 235, 253, 277
Lsp1109I	GCAGC	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	191, 227
MalI	GATC	4 cut(s)	39, 81, 105, 185
MboI	GATC	4 cut(s)	37, 79, 103, 183
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	3 cut(s)	27, 90, 254
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	27
NdeII	GATC	4 cut(s)	37, 79, 103, 183
NlaIII	CATG	3 cut(s)	26, 80, 134
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	75, 172
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	74, 171
Sau3AI	GATC	4 cut(s)	37, 79, 103, 183
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	28
SetI	ASST	2 cut(s)	53, 269
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	27, 90, 254
SsiI	CCGC	1 cut(s)	170
TasI	AATT	3 cut(s)	27, 90, 254
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	227
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.