Rh1DG332700
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
N/A
Physical Location & Seq
Forward (+)
55798575 .. 55810823
12249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG332700.1

Sequence Viewer

Length: 333 bp
ATGGATGGGACAGGAGGCCATGCAATTGGGATTGATCTGGGAACAACATACTCATGTGTGGGAGTGTGGAAGCACAATCGTGTAGAAATAATAGTAAATGATCAGGGCAATAGGACAACTCCATCTCATGTTGCCTTCACTGATAAGAAGCGATTGGTAGGTGATGCAGCATTTAACCAGATTAATTTTACACTTGTGTTGTGTGTTTGGACTTTGGAGGCAACAAAAGGAGACTTTTGTTTTTGTTTAGGGATCAGAGAAGAGGGACTGTTGGTCCACAGGGTTATACTATCCGATAATTTTGTTGATACATGTAATGAAAAGGAAGCTTAA
Functional Annotation

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

5.43

Isoelectric Point (pI)

11.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 61 4e-21 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 311
AhdI GACNNNNNGTC 1 cut(s) 272
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 130
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 225
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 274
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 274
BmsI GCATC 1 cut(s) 154
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 18
BslFI GGGAC 2 cut(s) 22, 279
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 22, 279
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 34, 100, 252
BspANI GGCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 260
BssMI GATC 3 cut(s) 34, 100, 252
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 37, 103, 255
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 34, 100, 252
BstNSI RCATGY 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 274
CviAII CATG 4 cut(s) 20, 54, 128, 312
CviJI RGCY 2 cut(s) 18, 329
CviKI_1 RGCY 2 cut(s) 18, 329
DpnI GATC 3 cut(s) 36, 102, 254
DpnII GATC 3 cut(s) 34, 100, 252
DriI GACNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 274
FaeI CATG 4 cut(s) 23, 57, 131, 315
FaiI YATR 6 cut(s) 21, 49, 55, 129, 287, 313
FaqI GGGAC 2 cut(s) 22, 279
FatI CATG 4 cut(s) 19, 53, 127, 311
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 18
Hin1II CATG 4 cut(s) 23, 57, 131, 315
HindIII AAGCTT 1 cut(s) 327
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 257, 295
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 23, 167
Hsp92II CATG 4 cut(s) 23, 57, 131, 315
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 34, 100, 252
LpnPI CCDG 4 cut(s) 23, 89, 191, 265
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 154
MalI GATC 3 cut(s) 36, 102, 254
MboI GATC 3 cut(s) 34, 100, 252
MboII GAAGA 1 cut(s) 272
MfeI CAATTG 1 cut(s) 24
MluCI AATT 3 cut(s) 24, 184, 298
MnlI CCTC 3 cut(s) 8, 211, 256
MseI TTAA 3 cut(s) 174, 183, 331
MslI CAYNNNNRTG 2 cut(s) 52, 78
MunI CAATTG 1 cut(s) 24
NdeII GATC 3 cut(s) 34, 100, 252
NlaIII CATG 4 cut(s) 23, 57, 131, 315
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 78
PciI ACATGT 1 cut(s) 311
PkrI GCNGC 1 cut(s) 169
PscI ACATGT 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 183
PspPI GGNCC 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 52, 78
SaqAI TTAA 3 cut(s) 174, 183, 331
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 34, 100, 252
Sau96I GGNCC 1 cut(s) 274
SetI ASST 2 cut(s) 163, 331
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 52, 78
Sse9I AATT 3 cut(s) 24, 184, 298
TaaI ACNGT 1 cut(s) 270
TasI AATT 3 cut(s) 24, 184, 298
Tru1I TTAA 3 cut(s) 174, 183, 331
Tru9I TTAA 3 cut(s) 174, 183, 331
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 183
XceI RCATGY 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.