Rh1DG332800
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
N/A
Physical Location & Seq
Forward (+)
55824394 .. 55836532
12139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG332800.1

Sequence Viewer

Length: 291 bp
ATGGAGGGAAAAGAAGAACATGCAATAGGGATCGACCTGGGAACCACGTACTCGTGTGTTGCAGTGTGGCAGCACGGTCGTGTTGAGATCATACCCAACGAACAGGGAAACAGGACGACTCCGTCTTACGTTGCCTTCACCGACTCCGAGAGCTTGGTCGGCGATGGAGCTATTAACCAGGTGGCCAGAAACCTCACCAACACCGTCTTTGGGTGTGGAGCTGTTGAAGGAGTCTCTGCAGTCCAAATCGGTCCTCACAAATGTCTTCCTTGGGAAGAAAGCTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

4.59

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 72 2.7e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 2 cut(s) 36, 177
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 4 cut(s) 153, 170, 221, 282
AluI AGCT 4 cut(s) 153, 170, 221, 282
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 38
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 130, 187
AvaII GGWCC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 185
BauI CACGAG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 2 cut(s) 38, 179
BcoDI GTCTC 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 38, 179
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 38, 179
BpiI GAAGAC 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 37, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 38, 179
BseDI CCNNGG 2 cut(s) 37, 269
BseLI CCNNNNNNNGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 30, 87
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 37, 269
BssMI GATC 2 cut(s) 30, 87
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 38, 179
Bst4CI ACNGT 2 cut(s) 77, 205
BstBAI YACGTR 1 cut(s) 48
BstKTI GATC 2 cut(s) 33, 90
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 30, 87
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 38, 179
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 36, 177
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 20
CviJI RGCY 5 cut(s) 153, 170, 185, 221, 282
CviKI_1 RGCY 5 cut(s) 153, 170, 185, 221, 282
CviQI GTAC 1 cut(s) 49
DpnI GATC 2 cut(s) 32, 89
DpnII GATC 2 cut(s) 30, 87
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 36, 177
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 92
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 1 cut(s) 23
HinfI GANTC 3 cut(s) 118, 143, 231
HphI GGTGA 2 cut(s) 130, 187
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 145, 221
HpyCH4III ACNGT 2 cut(s) 77, 205
HpyCH4IV ACGT 2 cut(s) 47, 129
HpyCH4V TGCA 3 cut(s) 23, 62, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 47, 129
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 2 cut(s) 30, 87
LmnI GCTCC 2 cut(s) 167, 218
LpnPI CCDG 8 cut(s) 23, 50, 89, 97, 164, 191, 199, 268
Lsp1109I GCAGC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 177
MaeII ACGT 2 cut(s) 47, 129
MalI GATC 2 cut(s) 32, 89
MboI GATC 2 cut(s) 30, 87
MboII GAAGA 3 cut(s) 26, 257, 287
MlsI TGGCCA 1 cut(s) 185
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 3 cut(s) 112, 137, 240
MnlI CCTC 2 cut(s) 203, 264
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 38, 179
MvaI CCWGG 2 cut(s) 38, 179
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 30, 87
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 43
NspI RCATGY 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 3 cut(s) 112, 137, 239
PpsI GAGTC 3 cut(s) 112, 137, 239
Ppu21I YACGTR 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 36, 177
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 36, 177
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 30, 87
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 3 cut(s) 112, 137, 240
ScrFI CCNGG 2 cut(s) 38, 179
SetI ASST 9 cut(s) 39, 50, 132, 155, 172, 183, 195, 223, 284
SexAI ACCWGGT 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 36, 177
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 77, 205
TaiI ACGT 2 cut(s) 50, 132
TaqI TCGA 1 cut(s) 33
TaqII GACCGA 1 cut(s) 239
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 251
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.