Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8547179 .. 8547817

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGAAGCAGACGATCGGGAAGCCATCGGAGCGAAGCGACGCCAAGTACAAAGGTGTTCGGAAGCGCAAGTGGGGCAAATGGGTCTCCGAGATCCGCCTACCCAACAGCCGCGAACGCATCTGGTTGGGCTCCTACAACACCCCCGAGAAAGCGGCGCGTGCCTTCGACGCGGCTCTGTTCTGCCTCCGCGGCCGCACCGCCAAGTTCAACTTCCCCGACAACCCTCCCGACATCTCCGGCGGCCGCTCCCTCTCCCCCGCCGAGATCCAGGCCGAGGCCGCCAGGTTCGCCAATAACGAGGCGAACCCTCCGCCGCCGCAGGTCCCGAGGAGCCACTCCGATCTTTCCATGTCGGAGCAGCAGACGGAGTCCCCGTCCGTCTCGGAGGGGAGTGGGAGTGGGACCCTCGTCATGGACAGTGCCGCTAGTGACTTTAGCGTGACGGTGAACCAAAACGACGAGTCGTTTTCGGACTTGTTTAGAACGTTCGGGTCGGGTAACTACGCGACGGAGTATGGATTGTTCCCGGGTTTTGACGATCTCAACGGTCAGTTTTTCAGTCCGGCACCTCAAACGCCAGCCGTTGATTACGCCGAGGAGAATTTAGCTCAGGAGTCGTTCCTATGGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

5.05

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	16 - 65	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	568
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	5 cut(s)	114, 160, 173, 192, 509
AclI	AACGTT	1 cut(s)	488
AclWI	GGATC	2 cut(s)	88, 262
AcoI	YGGCCR	2 cut(s)	193, 244
AcsI	RAATTY	2 cut(s)	604, 631
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	277, 415
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	270, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
Alw26I	GTCTC	2 cut(s)	91, 388
AlwI	GGATC	2 cut(s)	88, 262
Ama87I	CYCGRG	3 cut(s)	146, 328, 529
AoxI	GGCC	4 cut(s)	193, 244, 273, 279
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	604, 631
AspLEI	GCGC	2 cut(s)	69, 160
AspS9I	GGNCC	2 cut(s)	325, 405
AsuC2I	CCSGG	2 cut(s)	530, 531
AsuHPI	GGTGA	2 cut(s)	16, 460
AvaI	CYCGRG	3 cut(s)	146, 328, 529
AvaII	GGWCC	2 cut(s)	325, 405
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	272, 286
BcnI	CCSGG	2 cut(s)	530, 531
BcoDI	GTCTC	2 cut(s)	91, 388
BfaI	CTAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	192
Bme1390I	CCNGG	4 cut(s)	272, 286, 530, 531
Bme18I	GGWCC	2 cut(s)	325, 405
BmeT110I	CYCGRG	3 cut(s)	146, 328, 529
BmgT120I	GGNCC	2 cut(s)	325, 405
BmiI	GGNNCC	6 cut(s)	133, 327, 335, 406, 407, 570
BmrFI	CCNGG	4 cut(s)	272, 286, 530, 531
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	612
BpuMI	CCSGG	2 cut(s)	530, 531
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	5 cut(s)	190, 276, 329, 529, 597
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 385, 392, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 415
BseBI	CCWGG	2 cut(s)	272, 286
BseDI	CCNNGG	5 cut(s)	190, 276, 329, 529, 597
BseLI	CCNNNNNNNGG	2 cut(s)	277, 415
BseMII	CTCAG	1 cut(s)	626
BseRI	GAGGAG	2 cut(s)	346, 614
BseX3I	CGGCCG	2 cut(s)	193, 244
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	5 cut(s)	114, 160, 173, 192, 509
Bsh1285I	CGRYCG	3 cut(s)	18, 196, 247
BshFI	GGCC	4 cut(s)	195, 246, 275, 281
BshNI	GGYRCC	1 cut(s)	568
BsiEI	CGRYCG	3 cut(s)	18, 196, 247
BsiHKCI	CYCGRG	3 cut(s)	146, 328, 529
BsiSI	CCGG	3 cut(s)	240, 530, 566
BslFI	GGGAC	3 cut(s)	311, 358, 418
BslI	CCNNNNNNNGG	2 cut(s)	277, 415
BsmAI	GTCTC	2 cut(s)	91, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	3 cut(s)	311, 358, 418
BsnI	GGCC	4 cut(s)	195, 246, 275, 281
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	3 cut(s)	146, 328, 529
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	15, 93, 267, 343, 541
BspANI	GGCC	4 cut(s)	195, 246, 275, 281
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	5 cut(s)	114, 160, 173, 192, 509
BspLI	GGNNCC	6 cut(s)	133, 327, 335, 406, 407, 570
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	88, 262
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	249
BssECI	CCNNGG	5 cut(s)	190, 276, 329, 529, 597
BssMI	GATC	5 cut(s)	15, 93, 267, 343, 541
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	272, 286
Bst4CI	ACNGT	3 cut(s)	422, 448, 551
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	162, 582
BstDEI	CTNAG	1 cut(s)	612
BstDSI	CCRYGG	1 cut(s)	190
BstFNI	CGCG	5 cut(s)	114, 160, 173, 192, 509
BstHHI	GCGC	2 cut(s)	69, 160
BstKTI	GATC	5 cut(s)	18, 96, 270, 346, 544
BstMAI	GTCTC	2 cut(s)	91, 388
BstMBI	GATC	5 cut(s)	15, 93, 267, 343, 541
BstMCI	CGRYCG	3 cut(s)	18, 196, 247
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
BstNI	CCWGG	2 cut(s)	272, 286
BstPAI	GACNNNNGTC	1 cut(s)	410
BstSCI	CCNGG	4 cut(s)	270, 284, 528, 529
BstUI	CGCG	5 cut(s)	114, 160, 173, 192, 509
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	2 cut(s)	93, 267
BstYI	RGATCY	2 cut(s)	93, 267
BstZI	CGGCCG	2 cut(s)	193, 244
BsuRI	GGCC	4 cut(s)	195, 246, 275, 281
BtgI	CCRYGG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	162, 582
CciNI	GCGGCCGC	2 cut(s)	193, 244
CfoI	GCGC	2 cut(s)	69, 160
Cfr13I	GGNCC	2 cut(s)	325, 405
Cfr42I	CCGCGG	1 cut(s)	193
Cfr9I	CCCGGG	1 cut(s)	529
CseI	GACGC	2 cut(s)	50, 179
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	352, 415
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	5 cut(s)	17, 95, 269, 345, 543
DpnII	GATC	5 cut(s)	15, 93, 267, 343, 541
EaeI	YGGCCR	2 cut(s)	193, 244
EagI	CGGCCG	2 cut(s)	193, 244
EciI	GGCGGA	2 cut(s)	86, 303
EclXI	CGGCCG	2 cut(s)	193, 244
Eco24I	GRGCYC	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	325, 405
Eco52I	CGGCCG	2 cut(s)	193, 244
Eco88I	CYCGRG	3 cut(s)	146, 328, 529
EcoO109I	RGGNCCY	2 cut(s)	325, 405
EcoRII	CCWGG	2 cut(s)	270, 284
EcoT38I	GRGCYC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	355, 418
FaiI	YATR	4 cut(s)	353, 416, 519, 628
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	3 cut(s)	311, 358, 418
FatI	CATG	2 cut(s)	351, 414
FauI	CCCGC	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	2 cut(s)	68, 159
HaeIII	GGCC	4 cut(s)	195, 246, 275, 281
HapII	CCGG	3 cut(s)	240, 530, 566
HgaI	GACGC	2 cut(s)	50, 179
HhaI	GCGC	2 cut(s)	69, 160
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	355, 418
Hin6I	GCGC	2 cut(s)	67, 158
HinP1I	GCGC	2 cut(s)	67, 158
HinfI	GANTC	3 cut(s)	371, 464, 617
HpaII	CCGG	3 cut(s)	240, 530, 566
HphI	GGTGA	2 cut(s)	16, 460
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	7 cut(s)	31, 63, 91, 343, 358, 388, 475
Hpy188III	TCNNGA	4 cut(s)	19, 230, 328, 614
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	4 cut(s)	44, 173, 464, 514
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	422, 448, 551
HpyCH4IV	ACGT	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	1 cut(s)	488
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	355, 418
HspAI	GCGC	2 cut(s)	67, 158
KflI	GGGWCCC	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	15, 93, 267, 343, 541
LmnI	GCTCC	5 cut(s)	31, 137, 254, 333, 358
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	3 cut(s)	431, 442, 500
MalI	GATC	5 cut(s)	17, 95, 269, 345, 543
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	5 cut(s)	15, 93, 267, 343, 541
MflI	RGATCY	2 cut(s)	93, 267
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	604, 631
MlyI	GAGTC	3 cut(s)	380, 473, 626
MmeI	TCCRAC	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	3 cut(s)	240, 530, 566
MspR9I	CCNGG	4 cut(s)	272, 286, 530, 531
MvaI	CCWGG	2 cut(s)	272, 286
MvnI	CGCG	5 cut(s)	114, 160, 173, 192, 509
MwoI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
NciI	CCSGG	2 cut(s)	530, 531
NdeII	GATC	5 cut(s)	15, 93, 267, 343, 541
NlaIII	CATG	2 cut(s)	355, 418
NlaIV	GGNNCC	6 cut(s)	133, 327, 335, 406, 407, 570
NmeAIII	GCCGAG	3 cut(s)	289, 301, 622
NmuCI	GTSAC	2 cut(s)	431, 442
NotI	GCGGCCGC	2 cut(s)	193, 244
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 374
PflFI	GACNNNGTC	1 cut(s)	370
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	3 cut(s)	379, 472, 625
PpsI	GAGTC	3 cut(s)	379, 472, 625
PpuMI	RGGWCCY	2 cut(s)	325, 405
PshAI	GACNNNNGTC	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	488
Psp5II	RGGWCCY	2 cut(s)	325, 405
Psp6I	CCWGG	2 cut(s)	270, 284
PspGI	CCWGG	2 cut(s)	270, 284
PspN4I	GGNNCC	6 cut(s)	133, 327, 335, 406, 407, 570
PspPI	GGNCC	2 cut(s)	325, 405
PspPPI	RGGWCCY	2 cut(s)	325, 405
PsrI	GAACNNNNNNTAC	2 cut(s)	509, 541
PsuI	RGATCY	2 cut(s)	93, 267
PsyI	GACNNNGTC	1 cut(s)	370
PvuI	CGATCG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	193
Sau3AI	GATC	5 cut(s)	15, 93, 267, 343, 541
Sau96I	GGNCC	2 cut(s)	325, 405
SchI	GAGTC	3 cut(s)	380, 473, 626
ScrFI	CCNGG	4 cut(s)	272, 286, 530, 531
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	58, 290, 327, 491, 574, 613
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	193
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	325, 405
SmaI	CCCGGG	1 cut(s)	531
Sse9I	AATT	2 cut(s)	604, 631
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	4 cut(s)	270, 284, 528, 529
TaaI	ACNGT	3 cut(s)	422, 448, 551
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	604, 631
TatI	WGTACW	1 cut(s)	48
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	431, 442
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	431, 442
TspGWI	ACGGA	3 cut(s)	370, 383, 527
TspMI	CCCGGG	1 cut(s)	529
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	325, 405
XapI	RAATTY	2 cut(s)	604, 631
XmaI	CCCGGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.