Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13695244 .. 13695937

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAAGACAGCTTAGTGGACTGGGCTCGACCACTTCTCACACGGGCACTAGAGGACGGTAACTATACAGAGTTGGTGGATATCCGCTTGGACAACACCTACAACAGTCAAGAAATGGCACGCATGGTCGCCTGTGCTGCTGCCAGTATTCGTCACTCTGCTAAACGACGCCCAAAGATGAGCCAGATTGTACGCGCATTGGAAGGAGATGTGTCGTTAGACGACTTAAATGAGGGGGTAAAACCAGGGCAGACCGTTATGATGAATCCCGCTGCTGGTGGAAGCTCGGGCTATAACACAGAGGCATACAATGCCGACATGAAGAAGTTCAGGAAGTTAGCCCTTTCGAGCCAGACGAGCAGTGAGTTCGGAACTAACAGTTCCGACTCCACAGAAATGACCATCCCTGCGAACCCAAAGCCGCCACCAAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019722 GO:0019932 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090351 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

5.44

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	85, 270, 422
AcsI	RAATTY	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	12, 285
AluI	AGCT	2 cut(s)	12, 285
Ama87I	CYCGRG	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	137, 140, 272
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	124, 127, 259
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	138, 141, 273, 422
BlsI	GCNGC	4 cut(s)	139, 142, 274, 423
Bme1390I	CCNGG	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	26, 144
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	26, 144
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	124, 127, 259
Bsh1236I	CGCG	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	28, 49
BspACI	CCGC	3 cut(s)	85, 270, 422
BspFNI	CGCG	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	26, 144
BssECI	CCNNGG	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	4 cut(s)	59, 107, 256, 380
BstACI	GRCGYC	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 311, 357
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	124, 127, 259
BstV2I	GAAGAC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	197
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	124, 319
CviJI	RGCY	8 cut(s)	12, 26, 183, 285, 291, 341, 351, 421
CviKI_1	RGCY	8 cut(s)	12, 26, 183, 285, 291, 341, 351, 421
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	2 cut(s)	127, 322
FaiI	YATR	6 cut(s)	66, 125, 260, 294, 307, 320
FatI	CATG	2 cut(s)	123, 318
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	138, 141, 273, 422
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	138, 141, 273, 422
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	4 cut(s)	138, 141, 273, 422
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	127, 322
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	265, 386
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	371, 385, 437
Hpy188III	TCNNGA	2 cut(s)	110, 331
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	59, 107, 256, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 311, 357
HpyF3I	CTNAG	1 cut(s)	13
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	127, 322
HspAI	GCGC	1 cut(s)	195
Lsp1109I	GCAGC	3 cut(s)	124, 127, 259
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	59, 152
MboII	GAAGA	2 cut(s)	17, 334
MhlI	GDGCHC	2 cut(s)	28, 49
MluCI	AATT	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	3 cut(s)	46, 226, 295
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	137, 311, 357
NlaIII	CATG	2 cut(s)	127, 322
NmuCI	GTSAC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	139, 142, 274, 423
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	4 cut(s)	138, 141, 273, 422
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	28, 49
SetI	ASST	3 cut(s)	14, 101, 287
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	85, 270, 422
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	59, 107, 256, 380
TaqI	TCGA	2 cut(s)	28, 347
TasI	AATT	1 cut(s)	431
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	3 cut(s)	137, 140, 272
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	278, 335
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.