Rh2AG204300

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
N/A
Physical Location & Seq
Reverse (-)
20631979 .. 20632434
456 bp
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UTR
Exon/CDS
Intron
Rh2AG204300.1

Sequence Viewer

Length: 456 bp
ATGAAAGATAAGCTATTTGATGATGTAGTCATAGTTCGAGATGTGAAAGAAAATCCAGATATTGGAAGAATTCAAAAAGAAATTGCTGAAAGGTTTGGTATGGATTCCAATGCTCTGGAAAATCAATCTATAGCTGAAAAGGCACGTCGGATATGTGGAAGGATAAAAAACAATAAGACACTTGTTGTTTTAGATGATATATGGAATTTCTTTGATCTAAAAGTTGTGGGACTACCCGATGTGGCAACTTGTAAAATACTAATGACATCTAGAAGTCTAGAAGTATTATCTGTTAGTGTGAGTCATCGTTCCCTATTAGGAATAGACTACACGGGAATATATTGTTGTAATTACTTACCTTATGTATGTTGTGTAGTACGGTTGTACACAATAGGCGTAGTACGTTGTAGTACGATTGTAATCTGTTTATATACACCACAGAATGGGTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

17.04

Weight (kDa)

8.06

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 97 5.4e-13 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 62, 443
AcsI RAATTY 2 cut(s) 69, 205
AfaI GTAC 4 cut(s) 378, 386, 402, 412
AfiI CCNNNNNNNGG 2 cut(s) 62, 443
AgsI TTSAA 1 cut(s) 74
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 2 cut(s) 13, 134
AluI AGCT 2 cut(s) 13, 134
ApoI RAATTY 2 cut(s) 69, 205
BfaI CTAG 2 cut(s) 270, 278
BfmI CTRYAG 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 443
Bse8I GATNNNNATC 1 cut(s) 419
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 62, 443
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 62, 443
BsmFI GGGAC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 384
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 384
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 146
Csp6I GTAC 4 cut(s) 377, 385, 401, 411
CviJI RGCY 2 cut(s) 13, 134
CviKI_1 RGCY 2 cut(s) 13, 134
CviQI GTAC 4 cut(s) 377, 385, 401, 411
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 69
FaqI GGGAC 1 cut(s) 243
FspBI CTAG 2 cut(s) 270, 278
HinfI GANTC 2 cut(s) 104, 301
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 5 cut(s) 38, 56, 116, 270, 278
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 2 cut(s) 145, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 145, 403
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 69, 101
MaeI CTAG 2 cut(s) 270, 278
MaeII ACGT 2 cut(s) 145, 403
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 78
MluCI AATT 5 cut(s) 69, 81, 205, 349, 451
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 128
MseI TTAA 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 2 cut(s) 62, 443
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 18, 50
RsaI GTAC 4 cut(s) 378, 386, 402, 412
RsaNI GTAC 4 cut(s) 377, 385, 401, 411
SaqAI TTAA 1 cut(s) 454
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 310
SetI ASST 6 cut(s) 15, 95, 136, 148, 361, 406
SfcI CTRYAG 1 cut(s) 129
Sse9I AATT 5 cut(s) 69, 81, 205, 349, 451
SspMI CTAG 2 cut(s) 270, 278
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 2 cut(s) 148, 406
TaqI TCGA 1 cut(s) 37
TasI AATT 5 cut(s) 69, 81, 205, 349, 451
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 2 cut(s) 62, 443
XapI RAATTY 2 cut(s) 69, 205
XbaI TCTAGA 2 cut(s) 269, 277
XspI CTAG 2 cut(s) 270, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.