Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25324807 .. 25326921

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAACTATATATGCCATGGGCATAGATGATAAGATGCATACAATGGAAACCTCGATCCTCGGCCTCCTCTCTCTCAAGACCAAGAGAGACAGGAGCTTCGATGAGCCGACGCCGCGTGGCTCACCAAGAGTCAGTAAGGATTTGGGGACGGTTATAAACAGGTCGTCGTCCGGGTTCTCAGGTTTCGATTCCGATGGCGATGGCTCCAAGGGACATCCGCTGCCGCGGCTGTCGGTGTCGTCGGCGCAGGGAGTGGGAAATGATCAGGGATTGGGTTGGGATCTGCGTCCGGATGGGTTTCTAGTGGGACTTCGTCGGTGTCGTCCTCTGATGAGCAGCCAATTGTGCACGACCCCAGTCAATTTGGGGCTTTCAGGTTGGTTTGGATTTTTGGGGCTTTTTGTTGTTTTTGATCAAATTGAGTTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

15.64

Weight (kDa)

7.82

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccII	CGCG	2 cut(s)	118, 229
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	4 cut(s)	116, 221, 227, 229
AclWI	GGATC	2 cut(s)	52, 291
AcyI	GRCGYC	1 cut(s)	113
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	52, 291
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	223, 339
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	210, 351
BccI	CCATC	3 cut(s)	191, 197, 290
BclI	TGATCA	2 cut(s)	265, 415
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	5 cut(s)	116, 224, 227, 230, 340
BlsI	GCNGC	5 cut(s)	117, 225, 228, 231, 341
Bme1390I	CCNGG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	353
BoxI	GACNNNNGTC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	18, 61, 210, 227
BsaWI	WCCGGW	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	4 cut(s)	18, 61, 210, 227
BseGI	GGATG	2 cut(s)	217, 301
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	210, 351
Bsh1236I	CGCG	2 cut(s)	118, 229
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	174, 293
BslFI	GGGAC	3 cut(s)	163, 228, 324
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	3 cut(s)	163, 228, 324
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	57, 265, 283, 415
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	4 cut(s)	116, 221, 227, 229
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	2 cut(s)	118, 229
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	52, 291
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	18, 61, 210, 227
BssMI	GATC	4 cut(s)	57, 265, 283, 415
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	2 cut(s)	18, 210
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	2 cut(s)	18, 227
BstF5I	GGATG	2 cut(s)	217, 301
BstFNI	CGCG	2 cut(s)	118, 229
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	4 cut(s)	60, 268, 286, 418
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	57, 265, 283, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 229, 348
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	2 cut(s)	118, 229
BstV1I	GCAGC	2 cut(s)	210, 351
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	18, 227
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	217, 301
CfoI	GCGC	1 cut(s)	250
Cfr42I	CCGCGG	1 cut(s)	230
CseI	GACGC	2 cut(s)	121, 278
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	9 cut(s)	66, 99, 109, 123, 207, 232, 342, 373, 400
CviKI_1	RGCY	9 cut(s)	66, 99, 109, 123, 207, 232, 342, 373, 400
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	4 cut(s)	59, 267, 285, 417
DpnII	GATC	4 cut(s)	57, 265, 283, 415
Eco130I	CCWWGG	2 cut(s)	18, 210
EcoT14I	CCWWGG	2 cut(s)	18, 210
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	18, 210
FaeI	CATG	1 cut(s)	22
FaiI	YATR	7 cut(s)	11, 13, 15, 20, 26, 42, 158
FaqI	GGGAC	3 cut(s)	163, 228, 324
FatI	CATG	1 cut(s)	18
FbaI	TGATCA	2 cut(s)	265, 415
Fnu4HI	GCNGC	5 cut(s)	116, 224, 227, 230, 340
FokI	GGATG	2 cut(s)	204, 308
Fsp4HI	GCNGC	5 cut(s)	116, 224, 227, 230, 340
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	5 cut(s)	116, 224, 227, 230, 340
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	174, 293
HgaI	GACGC	2 cut(s)	121, 278
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	132, 191
HpaII	CCGG	2 cut(s)	174, 293
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	2 cut(s)	196, 333
Hpy188III	TCNNGA	2 cut(s)	79, 293
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	4 cut(s)	115, 172, 247, 321
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	40, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 229, 348
HpyF3I	CTNAG	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	292
Ksp22I	TGATCA	2 cut(s)	265, 415
KspI	CCGCGG	1 cut(s)	230
Kzo9I	GATC	4 cut(s)	57, 265, 283, 415
LmnI	GCTCC	2 cut(s)	96, 212
LpnPI	CCDG	9 cut(s)	79, 148, 168, 187, 236, 254, 306, 363, 372
Lsp1109I	GCAGC	2 cut(s)	210, 351
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	305
MalI	GATC	4 cut(s)	59, 267, 285, 417
MboI	GATC	4 cut(s)	57, 265, 283, 415
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	3 cut(s)	344, 364, 420
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	64, 71, 77, 80, 339
Mph1103I	ATGCAT	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	292
MspA1I	CMGCKG	2 cut(s)	223, 229
MspI	CCGG	2 cut(s)	174, 293
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	118, 229
MwoI	GCNNNNNNNGC	3 cut(s)	115, 229, 348
NciI	CCSGG	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	57, 265, 283, 415
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	315
PkrI	GCNGC	5 cut(s)	117, 225, 228, 231, 341
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	315
SacII	CCGCGG	1 cut(s)	230
SatI	GCNGC	5 cut(s)	116, 224, 227, 230, 340
Sau3AI	GATC	4 cut(s)	57, 265, 283, 415
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	5 cut(s)	56, 101, 167, 187, 382
SfaNI	GCATC	1 cut(s)	27
Sfr303I	CCGCGG	1 cut(s)	230
SgrBI	CCGCGG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	344, 364, 420
SsiI	CCGC	4 cut(s)	116, 221, 227, 229
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	18, 210
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	56, 102, 189
TasI	AATT	3 cut(s)	344, 364, 420
TauI	GCSGC	3 cut(s)	118, 229, 232
TfiI	GAWTC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	223, 339
Tth111I	GACNNNGTC	1 cut(s)	315
VneI	GTGCAC	1 cut(s)	349
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.