Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

51213798 .. 51220456

Gene Structure 6659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATAGCCAGATAGGATCTGAAAGAACCTTCCTTCCGAGAGGTGAGTTATTTGAGGAGTCCAAGGGAAACCTTCCTCGATTACCAGAACGTTCCGCTACTCTGTACAGTTACCAACCTGGAACAAGGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTCTGGGACTTTATCCAGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGCACAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAGCTCTGCCAATCAACAAAAATATCGGCCCCCTGGAAAGAGCAGTCCTAGTGAGTGGATGCATTATGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

123

Amino Acids

13.66

Weight (kDa)

9.77

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclI	AACGTT	1 cut(s)	91
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	295, 368
AjnI	CCWGG	3 cut(s)	118, 264, 328
AleI	CACNNNNGTG	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	2 cut(s)	187, 300
AluI	AGCT	2 cut(s)	187, 300
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	142, 241
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	154, 253
BciT130I	CCWGG	3 cut(s)	120, 266, 330
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	153, 192, 345
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	143, 242
BlsI	GCNGC	2 cut(s)	144, 243
Bme1390I	CCNGG	3 cut(s)	120, 266, 330
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	3 cut(s)	120, 266, 330
BmsI	GCATC	2 cut(s)	259, 345
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	63, 328
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	120, 266, 330
BseDI	CCNNGG	2 cut(s)	63, 328
BseGI	GGATG	2 cut(s)	274, 360
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	154, 253
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	63, 328
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	120, 266, 330
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	274, 360
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	17
BstNI	CCWGG	3 cut(s)	120, 266, 330
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	118, 264, 328
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	154, 253
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	274, 360
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	9, 187, 260, 300, 325
CviKI_1	RGCY	5 cut(s)	9, 187, 260, 300, 325
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	300
EcoRII	CCWGG	3 cut(s)	118, 264, 328
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	221
FaiI	YATR	4 cut(s)	219, 227, 257, 363
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	143, 242
FokI	GGATG	2 cut(s)	281, 367
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	143, 242
FspBI	CTAG	3 cut(s)	153, 192, 345
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	143, 242
HaeIII	GGCC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	22, 39
HpyAV	CCTTC	4 cut(s)	40, 44, 83, 213
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	182, 217, 241, 358
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	131, 139
Lsp1109I	GCAGC	2 cut(s)	154, 253
LweI	GCATC	2 cut(s)	259, 345
MaeI	CTAG	3 cut(s)	153, 192, 345
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	35, 49, 87
Mph1103I	ATGCAT	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	120, 266, 330
MvaI	CCWGG	3 cut(s)	120, 266, 330
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	1 cut(s)	221
OliI	CACNNNNGTG	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	144, 243
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	302
Psp1406I	AACGTT	1 cut(s)	91
Psp6I	CCWGG	3 cut(s)	118, 264, 328
PspGI	CCWGG	3 cut(s)	118, 264, 328
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	2 cut(s)	143, 242
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	120, 266, 330
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	9 cut(s)	32, 46, 75, 94, 121, 162, 189, 238, 302
SfaNI	GCATC	2 cut(s)	259, 345
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	3 cut(s)	153, 192, 345
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	118, 264, 328
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	105
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	142, 241
TspRI	CASTG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	3 cut(s)	153, 192, 345
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.