Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54088634 .. 54092159

Gene Structure 3526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCACTTGTTATTGTATCACGTATGCTCTTTTAGGGGATTGGAATATCTTCATGAGCACTGCAATCCGCCTGCGGTGCATAGAGACCTGAAGTCATCTAACATTCTTCTCGATTCCAATTTTAATGCTAAGCTTTCAGATTTTGGTCTTACTGTCACTTCGGGATTGAAGAGTAAGGAGAACATAAAGCTGTCAGGAAATTTGGGCTGTGTAGCACCAGAATATAATTTGGATGGTAAGTTAACGGACAAAAGTGATGTCTATGCTTTCGGAGTAGTTCTCTTGGAGCTCTTGATGGGAAGAAAGTTGGTGGAACATAAAGCAGCAGATGAATCCCAATCTATTATCACATGGGTAAGGTACTTTGAGTCTATATGCTGGCCCTACAAAAGTAGTTGGAGTTTACTGATTCTTGACATGCAGGCCATGCCCCAGCTCACTGACAGATCAAGGCTTCCAAACATTGTGGATCACGTGATAAAAGATACCATGGATTTAAAACACTTATACCAGGTTGCTGCTGTGGCAGTATTATGTGTGCAACCTGAACCAAGTTATCGACCTTTGATAACGGATGTACTGCACTCCCTAATCCCTCTTGTACCTATGGATCTTGGAGGGTCGCTGAGAATTGCAGACTGCATACCCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

6.12

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 118	1.4e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 106	1.4e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 74
AclWI	GGATC	2 cut(s)	477, 618
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	475
AfaI	GTAC	3 cut(s)	362, 579, 603
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	4 cut(s)	133, 190, 289, 436
AluI	AGCT	4 cut(s)	133, 190, 289, 436
Alw21I	GWGCWC	2 cut(s)	60, 291
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	477, 618
AoxI	GGCC	2 cut(s)	380, 423
ApeKI	GCWGC	2 cut(s)	323, 518
ApoI	RAATTY	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	475
Bbv12I	GWGCWC	2 cut(s)	60, 291
BbvI	GCAGC	2 cut(s)	335, 505
BccI	CCATC	2 cut(s)	227, 289
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	324, 519
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	2 cut(s)	325, 520
Bme1390I	CCNGG	1 cut(s)	512
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu1102I	GCTNAGC	1 cut(s)	129
BsaAI	YACGTR	2 cut(s)	22, 475
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	2 cut(s)	238, 580
BseMII	CTCAG	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	335, 505
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	382, 425
BsiHKAI	GWGCWC	2 cut(s)	60, 291
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	382, 425
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	60, 291
Bsp143I	GATC	3 cut(s)	446, 469, 610
Bsp1720I	GCTNAGC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	2 cut(s)	68, 74
BspANI	GGCC	2 cut(s)	382, 425
BspCNI	CTCAG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	52
BspPI	GGATC	2 cut(s)	477, 618
BspTNI	GGTCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	3 cut(s)	446, 469, 610
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstBAI	YACGTR	2 cut(s)	22, 475
BstC8I	GCNNGC	3 cut(s)	72, 380, 423
BstDEI	CTNAG	2 cut(s)	129, 626
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	238, 580
BstKTI	GATC	3 cut(s)	449, 472, 613
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	446, 469, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 427, 524
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	335, 505
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	382, 425
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	238, 580
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 438
Cac8I	GCNNGC	3 cut(s)	72, 380, 423
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	510
Csp6I	GTAC	3 cut(s)	361, 578, 602
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	5 cut(s)	53, 351, 418, 427, 490
CviJI	RGCY	8 cut(s)	133, 190, 207, 289, 382, 425, 436, 454
CviKI_1	RGCY	8 cut(s)	133, 190, 207, 289, 382, 425, 436, 454
CviQI	GTAC	3 cut(s)	361, 578, 602
DdeI	CTNAG	2 cut(s)	129, 626
DpnI	GATC	3 cut(s)	448, 471, 612
DpnII	GATC	3 cut(s)	446, 469, 610
DraI	TTTAAA	1 cut(s)	498
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	164
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	475
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	56, 354, 421, 430, 493
FatI	CATG	5 cut(s)	52, 350, 417, 426, 489
Fnu4HI	GCNGC	2 cut(s)	324, 519
FokI	GGATG	2 cut(s)	245, 587
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	324, 519
GluI	GCNGC	2 cut(s)	324, 519
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	382, 425
Hin1II	CATG	5 cut(s)	56, 354, 421, 430, 493
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	113, 332, 368, 409
HpaI	GTTAAC	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	243, 404
Hpy188I	TCNGA	2 cut(s)	139, 272
Hpy188III	TCNNGA	6 cut(s)	53, 110, 162, 195, 292, 413
Hpy8I	GTNNAC	2 cut(s)	243, 404
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	21, 474
HpyCH4V	TGCA	8 cut(s)	4, 63, 79, 421, 541, 583, 635, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 427, 524
HpyF3I	CTNAG	2 cut(s)	129, 626
HpySE526I	ACGT	2 cut(s)	21, 474
Hsp92II	CATG	5 cut(s)	56, 354, 421, 430, 493
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	446, 469, 610
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	335, 505
MabI	ACCWGGT	1 cut(s)	510
MaeII	ACGT	2 cut(s)	21, 474
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	448, 471, 612
MboI	GATC	3 cut(s)	446, 469, 610
MboII	GAAGA	4 cut(s)	41, 98, 181, 312
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	60, 291
MluCI	AATT	4 cut(s)	118, 199, 226, 630
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	606, 611
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	3 cut(s)	123, 242, 497
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	76, 427, 524
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	446, 469, 610
NlaIII	CATG	5 cut(s)	56, 354, 421, 430, 493
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	421
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	113, 332, 409
PkrI	GCNGC	2 cut(s)	325, 520
PleI	GAGTC	1 cut(s)	376
PmaCI	CACGTG	1 cut(s)	475
PmlI	CACGTG	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	2 cut(s)	22, 475
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	510
PspCI	CACGTG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	3 cut(s)	362, 579, 603
RsaNI	GTAC	3 cut(s)	361, 578, 602
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	123, 242, 497
SatI	GCNGC	2 cut(s)	324, 519
Sau3AI	GATC	3 cut(s)	446, 469, 610
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	60, 291
SexAI	ACCWGGT	1 cut(s)	510
Sse9I	AATT	4 cut(s)	118, 199, 226, 630
SsiI	CCGC	2 cut(s)	68, 74
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	2 cut(s)	24, 477
TaqI	TCGA	2 cut(s)	111, 559
TasI	AATT	4 cut(s)	118, 199, 226, 630
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	113, 332, 409
Tru1I	TTAA	3 cut(s)	123, 242, 497
Tru9I	TTAA	3 cut(s)	123, 242, 497
TscAI	CASTG	2 cut(s)	65, 445
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	323, 518
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	41, 345
TspGWI	ACGGA	2 cut(s)	260, 587
TspRI	CASTG	2 cut(s)	65, 445
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.