Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

59850356 .. 59850845

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG400900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATATACAGTTCCTCTGAAAGCACACAATACAGTACTCGTGAATACAAGGAAGACAAGTTGAAATTTAGAAAGTTAGCACTAGAAAGCCGAGAGCTAGATCAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAATCTGCCTCTAGTAGTGAAGGCCAACAAACTAGTCAAGATATCGAACACGGGCGAATGGACAAAGACAGCCAAGACTATTTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

79

Amino Acids

9.04

Weight (kDa)

4.72

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	3 cut(s)	125, 142, 172
ApaI	GGGCCC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	125, 126
BaeGI	GKGCMC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	4 cut(s)	83, 98, 162, 183
BmcAI	AGTACT	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	125, 126
BmiI	GGNNCC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	3 cut(s)	127, 144, 174
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	127, 144, 174
Bso31I	GGTCTC	1 cut(s)	110
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	127, 144, 174
BspLI	GGNNCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	11, 35
BstC8I	GCNNGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	127, 144, 174
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	127, 139
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	125, 126
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	6 cut(s)	90, 97, 127, 144, 174, 222
CviKI_1	RGCY	6 cut(s)	90, 97, 127, 144, 174, 222
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	129
FaiI	YATR	2 cut(s)	7, 235
FriOI	GRGCYC	1 cut(s)	129
FspBI	CTAG	4 cut(s)	83, 98, 162, 183
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	127, 144, 174
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	41, 188
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	11, 35
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	133, 142, 158
MaeI	CTAG	4 cut(s)	83, 98, 162, 183
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	65, 108
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	2 cut(s)	25, 169
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	144
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	127
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	125, 126
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	125, 126
ScaI	AGTACT	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	1 cut(s)	99
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	2 cut(s)	65, 108
SspMI	CTAG	4 cut(s)	83, 98, 162, 183
TaaI	ACNGT	2 cut(s)	11, 35
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	65, 108
TatI	WGTACW	1 cut(s)	35
TscAI	CASTG	2 cut(s)	127, 139
TspRI	CASTG	2 cut(s)	127, 139
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	4 cut(s)	83, 98, 162, 183
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.