Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

78439588 .. 78439881

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG553700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGGGTTCTTAGAGTTGCTTGCTGGTGTGTCCAAGATGATGAGGCTCATAGACCGTCAATGGGTCAAGTGGTGCAGATTCTCGAGGGGGTTTTGAATGTGAACTTGCCCTCAGTTCCAAGATCACTCCAACTCTTTGGAGATAGCCAGCACATAGTTTTCTTCACAGAGTCATCTTCAAGCCAGAGCTCACATGCACCAAGCAATAACACATCAACAGCTTCATCTCAGACCAAGAGCGCTGCATCTTCAACTATCTCCAAGAGATCTGAAGATCATCAAACGAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

6.38

Isoelectric Point (pI)

83.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	97, 180, 252
AluBI	AGCT	2 cut(s)	189, 221
AluI	AGCT	2 cut(s)	189, 221
Alw21I	GWGCWC	2 cut(s)	191, 290
Ama87I	CYCGRG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	191, 290
BbvI	GCAGC	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	243
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	2 cut(s)	126, 242
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	191, 290
BsiHKCI	CYCGRG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	191, 290
Bsp143I	GATC	3 cut(s)	122, 266, 274
BspCNI	CTCAG	2 cut(s)	125, 241
BssMI	GATC	3 cut(s)	122, 266, 274
Bst4CI	ACNGT	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	22, 149
BstDEI	CTNAG	3 cut(s)	11, 112, 228
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	3 cut(s)	125, 269, 277
BstMBI	GATC	3 cut(s)	122, 266, 274
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	22, 149
CfoI	GCGC	1 cut(s)	242
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	47, 147, 183, 189, 221
CviKI_1	RGCY	5 cut(s)	47, 147, 183, 189, 221
DdeI	CTNAG	3 cut(s)	11, 112, 228
DpnI	GATC	3 cut(s)	124, 268, 276
DpnII	GATC	3 cut(s)	122, 266, 274
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	197
FaiI	YATR	4 cut(s)	51, 155, 195, 292
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	243
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	79, 170
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	231, 271
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	76, 197, 245
HpyF3I	CTNAG	3 cut(s)	11, 112, 228
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	122, 266, 274
LpnPI	CCDG	3 cut(s)	10, 161, 197
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	254
MalI	GATC	3 cut(s)	124, 268, 276
MboI	GATC	3 cut(s)	122, 266, 274
MboII	GAAGA	4 cut(s)	154, 168, 240, 284
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	191, 290
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	37, 79, 121
NdeII	GATC	3 cut(s)	122, 266, 274
NlaIII	CATG	1 cut(s)	197
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	122, 266, 274
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	191, 290
SetI	ASST	2 cut(s)	191, 223
SfaNI	GCATC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	213
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.