Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80427659 .. 80431359

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG574600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGCATAAAGGAAGCTCTGGAGGATCCTCATGGTGTTCTAGGTAATTGGGATTATGATGCTGTTGATCCATGTAGCTGGACTATGGTCACTTGCTCTTCTGAAAACCTCGTTGTTGGCCTAGGAGTTCCTAGCCAGAATTTATCAGGCACTCTTTCTCCAAGCATAGGCAACTTGACAAATCTTCAGATTGTTCTCGTACAGAACAACAACATAACAGGACCAATCCCTCAGGAAATTGGGAAGCTCTCAAAGCTCAAGACTCTTGATGTTTCCAGCAACTTCTTGACTGGGGGAATTCCCTCCTCTTTGGGTCACCTGAAAAGCCTCCAGTACTTGAGGCTCAACAATAACAGTCTCACCGGCGTATTTCCGATGTCGCTGGCTAACATGACCAACCTTGCCTTTCTGGACCTGTCCTACAATAATCTGAGTGGCCCTGTGCCTAGATTTGCTGCTAAAACATTCAACATAGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAAGCAGACTGCAATGGGATGGAACTGATGCCAATGTCCATGAACTTGAATAATACACAGGCCGCTCTTCCTGACAAACCTAAAAGTCGCAAAATGGCACTTGCTTTTGGTTTGAGCCTCGGATGCCTCTGCCTGATTGTTCTTGGATTTGGAGTAGTTATATGGTGGAGGCAAAGGCGCTATAAACAGGCATTCTTTGATGTTAAAGGTACTTGCTTGCTAGATGACAGCAGATTATTAACTAAAGCAATAAAACAACATTTGTTATTGACTGGGAAACTAATTGGAGTAATGATTCCTCTGCTTATTGTGGTGATATTTCAGACAAGCATCACGAAGAAATTTCGCTTGGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

31.21

Weight (kDa)

9.08

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	2 - 33	2.9e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	55 - 139	9.5e-11	Leucine-rich repeat region
LRR_8	PF13855	60 - 118	1.5e-07	Leucine rich repeat
LRR_8	PF13855	85 - 144	1.1e-10	Leucine rich repeat
LRR_4	PF12799	108 - 145	5.3e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	572
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	3 cut(s)	20, 33, 62
AcsI	RAATTY	3 cut(s)	139, 297, 848
AcuI	CTGAAG	2 cut(s)	170, 528
AfaI	GTAC	3 cut(s)	201, 335, 718
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	469, 556
AjuI	GAANNNNNNNTTGG	1 cut(s)	839
AluBI	AGCT	4 cut(s)	17, 78, 247, 256
AluI	AGCT	4 cut(s)	17, 78, 247, 256
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	3 cut(s)	20, 33, 62
AoxI	GGCC	3 cut(s)	118, 436, 567
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	3 cut(s)	139, 297, 848
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	3 cut(s)	221, 412, 437
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	3 cut(s)	308, 352, 832
AvaII	GGWCC	2 cut(s)	221, 412
AvrII	CCTAGG	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	5 cut(s)	41, 122, 132, 447, 728
BfoI	RGCGCY	1 cut(s)	688
BisI	GCNGC	2 cut(s)	456, 570
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	2 cut(s)	457, 571
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	2 cut(s)	221, 412
BmgT120I	GGNCC	3 cut(s)	221, 412, 437
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	502
BmrI	ACTGGG	2 cut(s)	300, 789
BmsI	GCATC	4 cut(s)	49, 525, 620, 846
BmuI	ACTGGG	2 cut(s)	300, 789
BoxI	GACNNNNGTC	1 cut(s)	86
BpmI	CTGGAG	2 cut(s)	41, 314
BpuEI	CTTGAG	2 cut(s)	242, 358
BpuMI	CCSGG	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	121, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	3 cut(s)	295, 331, 784
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	121, 625
BseGI	GGATG	2 cut(s)	531, 635
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	245, 422
BseNI	ACTGG	3 cut(s)	295, 331, 784
BseRI	GAGGAG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	3 cut(s)	120, 438, 569
BsiSI	CCGG	2 cut(s)	363, 501
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	3 cut(s)	120, 438, 569
Bsp143I	GATC	3 cut(s)	25, 67, 489
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	3 cut(s)	120, 438, 569
BspCNI	CTCAG	2 cut(s)	244, 423
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	3 cut(s)	20, 33, 62
BspQI	GCTCTTC	2 cut(s)	103, 579
BsrBI	CCGCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	295, 331, 784
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	121, 625
BssMI	GATC	3 cut(s)	25, 67, 489
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	2 cut(s)	103, 579
BstC8I	GCNNGC	2 cut(s)	384, 725
BstDEI	CTNAG	2 cut(s)	231, 431
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	531, 635
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	3 cut(s)	28, 70, 492
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	25, 67, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 630
BstPAI	GACNNNNGTC	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	120, 438, 569
BtsCI	GGATG	2 cut(s)	531, 635
Cac8I	GCNNGC	2 cut(s)	384, 725
CfoI	GCGC	1 cut(s)	687
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	3 cut(s)	221, 412, 437
Csp6I	GTAC	3 cut(s)	200, 334, 717
CviAII	CATG	4 cut(s)	32, 72, 391, 547
CviQI	GTAC	3 cut(s)	200, 334, 717
DdeI	CTNAG	2 cut(s)	231, 431
DpnI	GATC	3 cut(s)	27, 69, 491
DpnII	GATC	3 cut(s)	25, 67, 489
Eam1104I	CTCTTC	2 cut(s)	103, 579
EarI	CTCTTC	2 cut(s)	103, 579
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	221, 412
Eco57I	CTGAAG	2 cut(s)	170, 528
Eco81I	CCTNAGG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	35, 75, 394, 550
FatI	CATG	4 cut(s)	31, 71, 390, 546
Fnu4HI	GCNGC	2 cut(s)	456, 570
FokI	GGATG	2 cut(s)	538, 642
Fsp4HI	GCNGC	2 cut(s)	456, 570
FspBI	CTAG	5 cut(s)	41, 122, 132, 447, 728
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	2 cut(s)	456, 570
GsuI	CTGGAG	2 cut(s)	41, 314
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	3 cut(s)	120, 438, 569
HapII	CCGG	2 cut(s)	363, 501
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	4 cut(s)	35, 75, 394, 550
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	2 cut(s)	262, 802
HpaII	CCGG	2 cut(s)	363, 501
HphI	GGTGA	3 cut(s)	308, 352, 832
Hpy188I	TCNGA	8 cut(s)	103, 189, 375, 432, 489, 508, 629, 831
Hpy188III	TCNNGA	8 cut(s)	20, 233, 259, 266, 286, 410, 578, 841
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	497, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 630
HpyF3I	CTNAG	2 cut(s)	231, 431
Hsp92II	CATG	4 cut(s)	35, 75, 394, 550
HspAI	GCGC	1 cut(s)	685
Kzo9I	GATC	3 cut(s)	25, 67, 489
LguI	GCTCTTC	2 cut(s)	103, 579
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	4 cut(s)	49, 525, 620, 846
MaeI	CTAG	5 cut(s)	41, 122, 132, 447, 728
MaeIII	GTNAC	2 cut(s)	88, 314
MalI	GATC	3 cut(s)	27, 69, 491
MbiI	CCGCTC	1 cut(s)	572
MboI	GATC	3 cut(s)	25, 67, 489
MboII	GAAGA	4 cut(s)	90, 176, 566, 856
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	6 cut(s)	46, 139, 237, 297, 789, 848
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	457
MseI	TTAA	2 cut(s)	711, 746
MspI	CCGG	2 cut(s)	363, 501
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	253, 630
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	25, 67, 489
NlaIII	CATG	4 cut(s)	35, 75, 394, 550
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	88, 314
PciSI	GCTCTTC	2 cut(s)	103, 579
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	2 cut(s)	457, 571
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	3 cut(s)	221, 412, 437
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	201, 335, 718
RsaNI	GTAC	3 cut(s)	200, 334, 717
SapI	GCTCTTC	2 cut(s)	103, 579
SaqAI	TTAA	2 cut(s)	711, 746
SatI	GCNGC	2 cut(s)	456, 570
Sau3AI	GATC	3 cut(s)	25, 67, 489
Sau96I	GGNCC	3 cut(s)	221, 412, 437
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	502
SfaNI	GCATC	4 cut(s)	49, 525, 620, 846
SgrAI	CRCCGGYG	1 cut(s)	362
SinI	GGWCC	2 cut(s)	221, 412
SmlI	CTYRAG	2 cut(s)	257, 337
SmoI	CTYRAG	2 cut(s)	257, 337
Sse9I	AATT	6 cut(s)	46, 139, 237, 297, 789, 848
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	5 cut(s)	41, 122, 132, 447, 728
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	356
TasI	AATT	6 cut(s)	46, 139, 237, 297, 789, 848
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	2 cut(s)	711, 746
Tru9I	TTAA	2 cut(s)	711, 746
TseFI	GTSAC	2 cut(s)	88, 314
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	2 cut(s)	88, 314
TspDTI	ATGAA	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	221, 412
XapI	RAATTY	3 cut(s)	139, 297, 848
XmaJI	CCTAGG	1 cut(s)	121
XspI	CTAG	5 cut(s)	41, 122, 132, 447, 728
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.