Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

85977042 .. 85977656

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG633900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTTCAGCTGGTCCGGCGGCTCCGGCAGTAGCGCCGGCTTCGAGTGTTGAAAATCCGAATGGTAACAAGGCAAGGTTTGCTGATAAGCTACCGGAGGAAATTAATGAGATGAAGATCAAAGATGAGAAGGAAATAGAAGCAGCTGTGGTGGATGGGAATGGGACTGAAACCGGCCACATTATTGTGACTACGATCGGTGGTCGAAATGGTCAGCCTAAACAGATGAATAAATTCTTCCATGACATGAACCATACTGAAAAGCAAAGTTTGGGAAAAATAATGAGTTTTGATAGTGAGGAAGAAAGTAAGTTGGTTGATGTGGTTGTCACTTGTGGAACCTATGAGGAATATGCTGATATGTTAGATACTGAAAATGTGTGCATATTAACTCCGATTATTTTAACTACAGCTCTGGTTCAAGTGTTACTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

145

Amino Acids

15.66

Weight (kDa)

4.59

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	53, 422
AluBI	AGCT	4 cut(s)	11, 91, 146, 413
AluI	AGCT	4 cut(s)	11, 91, 146, 413
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	233
AseI	ATTAAT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	2 cut(s)	21, 144
BlsI	GCNGC	2 cut(s)	22, 145
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	24, 340
BsaBI	GATNNNNATC	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	94
Bse118I	RCCGGY	2 cut(s)	37, 173
Bse8I	GATNNNNATC	1 cut(s)	116
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	5 cut(s)	17, 26, 38, 95, 174
BslFI	GGGAC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	117, 195
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	24, 340
BsrFI	RCCGGY	2 cut(s)	37, 173
BssAI	RCCGGY	2 cut(s)	37, 173
BssMI	GATC	2 cut(s)	117, 195
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	120, 198
BstMBI	GATC	2 cut(s)	117, 195
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	2 cut(s)	37, 173
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	2 cut(s)	242, 247
CviJI	RGCY	9 cut(s)	5, 11, 23, 41, 91, 146, 177, 217, 413
CviKI_1	RGCY	9 cut(s)	5, 11, 23, 41, 91, 146, 177, 217, 413
DpnI	GATC	2 cut(s)	119, 197
DpnII	GATC	2 cut(s)	117, 195
EaeI	YGGCCR	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	14
FaeI	CATG	2 cut(s)	245, 250
FaiI	YATR	8 cut(s)	243, 248, 255, 345, 354, 362, 386, 436
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	241, 246
Fnu4HI	GCNGC	2 cut(s)	21, 144
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	21, 144
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	2 cut(s)	21, 144
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	5 cut(s)	17, 26, 38, 95, 174
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	245, 250
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HpaII	CCGG	5 cut(s)	17, 26, 38, 95, 174
Hpy188I	TCNGA	2 cut(s)	60, 396
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
Hsp92II	CATG	2 cut(s)	245, 250
HspAI	GCGC	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	117, 195
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	30, 39, 51, 108, 187, 401
Lsp1109I	GCAGC	1 cut(s)	155
MaeIII	GTNAC	4 cut(s)	65, 187, 328, 426
MalI	GATC	2 cut(s)	119, 197
MboI	GATC	2 cut(s)	117, 195
MboII	GAAGA	3 cut(s)	127, 229, 314
MluCI	AATT	2 cut(s)	102, 233
MnlI	CCTC	3 cut(s)	91, 292, 340
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	3 cut(s)	105, 389, 404
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	11, 146
MspI	CCGG	5 cut(s)	17, 26, 38, 95, 174
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 80
NaeI	GCCGGC	1 cut(s)	39
NdeII	GATC	2 cut(s)	117, 195
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	245, 250
NlaIV	GGNNCC	2 cut(s)	24, 340
NmuCI	GTSAC	2 cut(s)	187, 328
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	22, 145
Ple19I	CGATCG	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	24, 340
PspPI	GGNCC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	11, 146
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	105, 389, 404
SatI	GCNGC	2 cut(s)	21, 144
Sau3AI	GATC	2 cut(s)	117, 195
Sau96I	GGNCC	1 cut(s)	14
SetI	ASST	6 cut(s)	13, 80, 93, 148, 344, 415
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	102, 233
SsiI	CCGC	1 cut(s)	20
TaqI	TCGA	2 cut(s)	44, 205
TasI	AATT	2 cut(s)	102, 233
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	105, 389, 404
Tru9I	TTAA	3 cut(s)	105, 389, 404
TseFI	GTSAC	2 cut(s)	187, 328
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	187, 328
TspDTI	ATGAA	3 cut(s)	128, 242, 263
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.