Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

86296281 .. 86296880

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG639300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAACTTTAAATGTGGATCTCAGTTCTCAAAATGGGGTCCAGCACCTACAAACTTGCGGGAATTGGATTCTTATTATACAAATTGGGATGCTTATGCTGACATTGCTAGTGTATTCATGCCCAATCATTTGCAGTTTATAGGGGCGACAATGGGAACATCAGAGCTGAACATACAAACAGATAATGGCCAGGTTGGCATGCCAAGTAATGTTTGTTGCGTTGTTGTCGAGTATTGTCCTGGTGGTGCACTGAAATCTTACCTCATAAAGAACCGCAGAAAGAAGCTGGCTTTCAAAGTAGTTGTCCAATTGGCACTAGATCTTGCACGAGGTTTATGCTATCTCCATTCACAGAAGATTGTTCACAGAGATGTTAAAACAGAAAACATGCTTCTGGACAAGACACGTACTGTAAAAATAGCTGACTTTGGGGTTGCCACTTGCTCGTGTGGAGGCCTCAAATCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.23

Weight (kDa)

8.98

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	69 - 147	3.4e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	70 - 147	3.5e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	58, 274
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	189, 238
AluBI	AGCT	3 cut(s)	166, 286, 422
AluI	AGCT	3 cut(s)	166, 286, 422
Alw21I	GWGCWC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	187, 454
ApaLI	GTGCAC	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	2 cut(s)	327, 445
Bbv12I	GWGCWC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	2 cut(s)	191, 240
BfaI	CTAG	2 cut(s)	108, 317
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	191, 240
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	191, 240
BmsI	GCATC	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	191, 240
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	250
BshFI	GGCC	2 cut(s)	189, 456
BsiHKAI	GWGCWC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	189, 456
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	17, 319
BspACI	CCGC	2 cut(s)	58, 274
BspANI	GGCC	2 cut(s)	189, 456
BspCNI	CTCAG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	102
BssMI	GATC	2 cut(s)	17, 319
BssSI	CACGAG	2 cut(s)	327, 445
Bst2BI	CACGAG	2 cut(s)	327, 445
Bst2UI	CCWGG	2 cut(s)	191, 240
Bst4CI	ACNGT	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	200, 288
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	20, 322
BstMBI	GATC	2 cut(s)	17, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 195
BstNI	CCWGG	2 cut(s)	191, 240
BstNSI	RCATGY	2 cut(s)	202, 391
BstSCI	CCNGG	2 cut(s)	189, 238
BstSLI	GKGCMC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	17, 319
BstYI	RGATCY	2 cut(s)	17, 319
BsuRI	GGCC	2 cut(s)	189, 456
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	200, 288
CciI	TCATGA	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	4 cut(s)	118, 199, 388, 468
CviJI	RGCY	6 cut(s)	166, 189, 286, 290, 422, 456
CviKI_1	RGCY	6 cut(s)	166, 189, 286, 290, 422, 456
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	19, 321
DpnII	GATC	2 cut(s)	17, 319
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	189, 238
FaeI	CATG	4 cut(s)	121, 202, 391, 471
FatI	CATG	4 cut(s)	117, 198, 387, 467
FauI	CCCGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	2 cut(s)	108, 317
HaeIII	GGCC	2 cut(s)	189, 456
Hin1II	CATG	4 cut(s)	121, 202, 391, 471
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	248, 364
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	395, 468
Hpy8I	GTNNAC	2 cut(s)	248, 364
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	133, 248, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 195
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	121, 202, 391, 471
Kzo9I	GATC	2 cut(s)	17, 319
LpnPI	CCDG	7 cut(s)	54, 176, 203, 225, 252, 272, 380
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	108, 317
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	19, 321
MboI	GATC	2 cut(s)	17, 319
MboII	GAAGA	1 cut(s)	367
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	2 cut(s)	17, 319
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	3 cut(s)	62, 82, 308
MluNI	TGGCCA	1 cut(s)	189
MnlI	CCTC	4 cut(s)	272, 323, 446, 467
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	9, 375
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	191, 240
MunI	CAATTG	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	191, 240
MwoI	GCNNNNNNNGC	2 cut(s)	104, 195
NdeII	GATC	2 cut(s)	17, 319
NlaIII	CATG	4 cut(s)	121, 202, 391, 471
NlaIV	GGNNCC	1 cut(s)	39
NspI	RCATGY	2 cut(s)	202, 391
PaeI	GCATGC	1 cut(s)	202
PagI	TCATGA	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	189, 238
PspGI	CCWGG	2 cut(s)	189, 238
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	17, 319
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	9, 375
Sau3AI	GATC	2 cut(s)	17, 319
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	191, 240
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	49, 168, 195, 264, 288, 334, 409, 424
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	62, 82, 308
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	2 cut(s)	58, 274
SspMI	CTAG	2 cut(s)	108, 317
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	189, 238
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	62, 82, 308
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	9, 375
Tru9I	TTAA	2 cut(s)	9, 375
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	17, 106
TspRI	CASTG	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	38
XceI	RCATGY	2 cut(s)	202, 391
XspI	CTAG	2 cut(s)	108, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.