Rh2BG194700

NB-ARC domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Forward (+)
17697932 .. 17698841
910 bp
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UTR
Exon/CDS
Intron
Rh2BG194700.1

Sequence Viewer

Length: 171 bp
ATGCTACCCTCTTCCACCCCTGAAAACACCGTAATCTTCCAGTGTGACTTGTTCCTAGCACCGCTCCTCACCACCACCGACCTTCCTCATCCAAAGTCATTAATCCTGTACACATTGAACCGCGGGGAGCTGCTTGTGATCAAAGCCTTCGCAGCCATGTTGCCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.16

Weight (kDa)

5.46

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 62, 121, 123
AfaI GTAC 1 cut(s) 110
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 130, 152
AseI ATTAAT 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 2 cut(s) 117, 164
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 131, 153
BlsI GCNGC 2 cut(s) 132, 154
BsaJI CCNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 117, 164
Bsh1236I CGCG 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 3 cut(s) 62, 121, 123
BspFNI CGCG 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 117, 164
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 47
Cfr42I CCGCGG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 130, 146, 155
CviKI_1 RGCY 3 cut(s) 130, 146, 155
CviQI GTAC 1 cut(s) 109
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
FaeI CATG 1 cut(s) 160
FaiI YATR 1 cut(s) 158
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 131, 153
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 131, 153
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 131, 153
Hin1II CATG 1 cut(s) 160
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 92, 157
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 69, 127
LpnPI CCDG 3 cut(s) 33, 53, 119
Lsp1109I GCAGC 2 cut(s) 117, 164
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 140
MbiI CCGCTC 1 cut(s) 64
MboI GATC 1 cut(s) 138
MboII GAAGA 2 cut(s) 3, 28
MnlI CCTC 3 cut(s) 19, 77, 96
MseI TTAA 2 cut(s) 101, 169
MspA1I CMGCKG 1 cut(s) 123
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 132, 154
PshBI ATTAAT 1 cut(s) 101
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 101, 169
SatI GCNGC 2 cut(s) 131, 153
Sau3AI GATC 1 cut(s) 138
SetI ASST 2 cut(s) 84, 132
Sfr303I CCGCGG 1 cut(s) 124
SgeI CNNG 8 cut(s) 32, 52, 61, 68, 118, 134, 136, 146
SgrBI CCGCGG 1 cut(s) 124
SsiI CCGC 3 cut(s) 62, 121, 123
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 31
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 2 cut(s) 101, 169
Tru9I TTAA 2 cut(s) 101, 169
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 130, 152
Tsp45I GTSAC 1 cut(s) 44
TspRI CASTG 1 cut(s) 47
VspI ATTAAT 1 cut(s) 101
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.