Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34504096 .. 34516843

Gene Structure 12748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAATGGTGTTAATTCTTCTTATGAGGATTACCCAGAGTTTGTTGAGGTTGATCATACTGGAACATATGGAAGAGGTGTGCGGGATGGATCGTGGTGGCGTGTGATGTTGGTCGTGACGGCGTCAAGGCGGTGGTGCATCAGGGCTAGCTTCTGGTACCTCGGTGGTTGTCGGGTCAAGTCAAGGCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

64

Amino Acids

7.46

Weight (kDa)

9.23

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	2 cut(s)	82, 130
AclWI	GGATC	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	158
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	187
Asp718I	GGTACC	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BanI	GGYRCC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	52
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	158
BmsI	GCATC	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	52, 89
BspACI	CCGC	2 cut(s)	82, 130
BspLI	GGNNCC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	52, 89
BssNI	GRCGYC	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	55, 92
BstMBI	GATC	2 cut(s)	52, 89
BstV1I	GCAGC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	148
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	3 cut(s)	146, 150, 187
CviKI_1	RGCY	3 cut(s)	146, 150, 187
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	54, 91
DpnII	GATC	2 cut(s)	52, 89
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
FaiI	YATR	4 cut(s)	24, 57, 67, 69
FalI	AAGNNNNNCTT	1 cut(s)	175
FauI	CCCGC	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	52, 89
LpnPI	CCDG	4 cut(s)	45, 48, 127, 139
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	54, 91
MboI	GATC	2 cut(s)	52, 89
MboII	GAAGA	2 cut(s)	9, 84
MluCI	AATT	1 cut(s)	13
MnlI	CCTC	4 cut(s)	19, 40, 68, 170
MseI	TTAA	1 cut(s)	12
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	2 cut(s)	52, 89
NheI	GCTAGC	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	52, 89
SetI	ASST	4 cut(s)	51, 79, 152, 162
SfaNI	GCATC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	2 cut(s)	82, 130
SspMI	CTAG	1 cut(s)	147
TasI	AATT	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	121
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.