Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35643011 .. 35661175

Gene Structure 18165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCCCCAACTCTTGAAAGGAGTTGAGCACTGTCATGAGAATCAACTCTTGCATGGAGATATTAGACCCGAAAATCCAATCCATAGTGTGTTTTCTCCGAATGGGAAGTTCAGACGTAGTGTTTCGTCTTCGTGGCAAAGGGGTCAGCTTTTGGGGAGTGGTTCCTATGGAACTGTCTACGAAGGCTTTACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

65

Amino Acids

7.3

Weight (kDa)

6.9

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	32, 175
BstDEI	CTNAG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	28
CciI	TCATGA	1 cut(s)	34
CviAII	CATG	2 cut(s)	35, 53
CviJI	RGCY	2 cut(s)	148, 186
CviKI_1	RGCY	2 cut(s)	148, 186
DdeI	CTNAG	1 cut(s)	192
FaeI	CATG	2 cut(s)	38, 56
FaiI	YATR	4 cut(s)	36, 54, 84, 168
FatI	CATG	2 cut(s)	34, 52
FblI	GTMKAC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	38, 56
HinfI	GANTC	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	99, 113
Hpy188III	TCNNGA	2 cut(s)	13, 35
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	32, 175
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	38, 56
MaeII	ACGT	1 cut(s)	115
MboII	GAAGA	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	38, 56
NlaIV	GGNNCC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	2 cut(s)	118, 150
SgeI	CNNG	6 cut(s)	25, 47, 61, 65, 80, 144
SmiMI	CAYNNNNRTG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	32, 175
TaiI	ACGT	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	35
TspRI	CASTG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.