Rh2BG430800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Reverse (-)
61016384 .. 61016911
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG430800.1

Sequence Viewer

Length: 426 bp
ATGGAACTGAGGCCTTTGAAAAACACAACTTATATAACCAAAAGTGGTTCACTGGCACTCGAGTATCGCTTGGATGTTGCTTCCCAAAGCAATCAATCATACAGGTATGACTATGACGTTTTTGATCGAATCTGGTTGCCTTTCAACTTCAATTTGTGGGGAGAGTTAAGTACCTCGCTTACGGTTGATTCCCTCATTCATAATGACTACCAAGTGCCATCTATAGTAATGAGTACTGCAGGCACTGCGATGAACTCTAGTACTCCCATGTATATCGGCTGGAATCCGCCAGATGCAACTTCTGAATACTATGTGTATATGCACTTTGCTGAAATCCAGAAGTTGAAAGCCAACGAGTCCAGATCCTTCAATATCAGTGTTTTCAAAGGCGATGCCGAGGCGAGCCCGGGGCGCGCTCCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

5.04

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 1 - 128 2.2e-40 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 414
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 357
AfaI GTAC 3 cut(s) 172, 235, 262
AgsI TTSAA 6 cut(s) 19, 145, 151, 346, 370, 385
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 2 cut(s) 59, 406
AoxI GGCC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 414, 416
AsuC2I CCSGG 2 cut(s) 407, 408
AvaI CYCGRG 2 cut(s) 59, 406
BaeI ACNNNNGTAYC 2 cut(s) 47, 80
BanII GRGCYC 1 cut(s) 407
BccI CCATC 1 cut(s) 226
BcnI CCSGG 2 cut(s) 407, 408
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 2 cut(s) 222, 237
BmcAI AGTACT 2 cut(s) 235, 262
Bme1390I CCNGG 2 cut(s) 407, 408
BmeT110I CYCGRG 2 cut(s) 59, 406
BmrFI CCNGG 2 cut(s) 407, 408
BmsI GCATC 2 cut(s) 283, 382
BpuMI CCSGG 2 cut(s) 407, 408
BsaJI CCNNGG 3 cut(s) 396, 406, 407
BsaWI WCCGGW 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 396, 406, 407
BseGI GGATG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 57
BsePI GCGCGC 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 13
BsiHKCI CYCGRG 2 cut(s) 59, 406
BsiSI CCGG 2 cut(s) 407, 419
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 2 cut(s) 59, 406
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 124, 362
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 13
BspFNI CGCG 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 396, 406, 407
BssHII GCGCGC 1 cut(s) 412
BssMI GATC 2 cut(s) 124, 362
Bst4CI ACNGT 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 241, 403, 414
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 2 cut(s) 414, 416
BstKTI GATC 2 cut(s) 127, 365
BstMBI GATC 2 cut(s) 124, 362
BstMWI GCNNNNNNNGC 2 cut(s) 245, 411
BstSCI CCNGG 2 cut(s) 405, 406
BstSFI CTRYAG 2 cut(s) 222, 237
BstUI CGCG 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 1 cut(s) 13
BtgZI GCGATG 2 cut(s) 263, 405
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 50, 243, 382
Cac8I GCNNGC 3 cut(s) 241, 403, 414
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 2 cut(s) 414, 416
Cfr9I CCCGGG 1 cut(s) 406
Csp6I GTAC 3 cut(s) 171, 234, 261
CviAII CATG 1 cut(s) 268
CviJI RGCY 4 cut(s) 13, 279, 350, 405
CviKI_1 RGCY 4 cut(s) 13, 279, 350, 405
CviQI GTAC 3 cut(s) 171, 234, 261
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 126, 364
DpnII GATC 2 cut(s) 124, 362
EciI GGCGGA 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 59, 406
EcoT38I GRGCYC 1 cut(s) 407
FaeI CATG 1 cut(s) 271
FatI CATG 1 cut(s) 267
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 407
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 413, 415
HaeIII GGCC 1 cut(s) 13
HapII CCGG 2 cut(s) 407, 419
HhaI GCGC 2 cut(s) 414, 416
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 412, 414
HinP1I GCGC 2 cut(s) 412, 414
HinfI GANTC 4 cut(s) 129, 188, 283, 356
HpaII CCGG 2 cut(s) 407, 419
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 337, 360
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 239, 296, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 411
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 412, 414
Kzo9I GATC 2 cut(s) 124, 362
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 38, 88, 118, 225, 265, 303, 350, 373, 420
LweI GCATC 2 cut(s) 283, 382
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 117
MalI GATC 2 cut(s) 126, 364
MboI GATC 2 cut(s) 124, 362
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 4 cut(s) 3, 184, 203, 391
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 2 cut(s) 407, 419
MspR9I CCNGG 2 cut(s) 407, 408
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 245, 411
NciI CCSGG 2 cut(s) 407, 408
NdeII GATC 2 cut(s) 124, 362
NlaIII CATG 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 59
PauI GCGCGC 1 cut(s) 412
PceI AGGCCT 1 cut(s) 13
PfeI GAWTC 3 cut(s) 129, 188, 283
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspXI VCTCGAGB 1 cut(s) 59
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 362
PteI GCGCGC 1 cut(s) 412
RsaI GTAC 3 cut(s) 172, 235, 262
RsaNI GTAC 3 cut(s) 171, 234, 261
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 2 cut(s) 124, 362
ScaI AGTACT 2 cut(s) 235, 262
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 407, 408
SduI GDGCHC 1 cut(s) 407
SetI ASST 3 cut(s) 107, 120, 176
SfaNI GCATC 2 cut(s) 283, 382
SfcI CTRYAG 2 cut(s) 222, 237
Sfr274I CTCGAG 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 59
SmaI CCCGGG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 258
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 405, 406
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 60, 127
TasI AATT 1 cut(s) 151
TatI WGTACW 2 cut(s) 233, 260
TfiI GAWTC 3 cut(s) 129, 188, 283
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 3 cut(s) 57, 250, 382
TspDTI ATGAA 2 cut(s) 188, 266
TspMI CCCGGG 1 cut(s) 406
TspRI CASTG 3 cut(s) 57, 250, 382
XhoI CTCGAG 1 cut(s) 59
XmaI CCCGGG 1 cut(s) 406
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 2 cut(s) 235, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.