Rh2BG441600
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Forward (+)
62578300 .. 62589927
11628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG441600.1

Sequence Viewer

Length: 1545 bp
ATGGGACCAAAGGGTCGCTATGTGATTATTGAGAAAAGCGGCAAGAATCCCCAGGTCACAAAGGACGGTGTTACTGTTGCAAAGAGCATTAGTTTCCAGGACAAGTACAAGGATGTGGGTGCGAACCTCGTGAAACAGGTTGCCAGAGCAACTAATACTGCTGCCGGAGATGGTACAACATGTGCAACTGTCTTGACCCAAGCAATACTCATAGAGGGTTGCAAGTCCATAGCTGCTGGGGTAAATGCAATGGATTTGCGCAGTGGTATCAATATGGCAGTTGATGCTATTGTTACTGATCTGAAAAGCAAAGCATTGATGATAAGCACACCAGAAGAGATTACACAGGTTGCCACTATTTCTGCCAATGGCGAACGAGAGATTGGAGAGTTGATAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACAGTTGCTGATGGGAATACATTGGATAATGAATTGGAAGTGGTTGAAGGAATGAAGCTTGGCAGAGGTTATATTTCTCCCTATTTTATCACTAACCAAAAGACTCAGACATGTGAATTGGAATACCCACTAATCCTCATTCATGAAAAAAGAATTTCAAACATGACTGCACTCGTGAGAATACTAGAGCTGGCCGTAAATAAAAATAGACCACTTCTTGTTGTAGCCGAGGATGTTGAAAGTGATCCACTTTCCATGCTTATACTCAACAAGCATCATGCTGGGGTTAAGGTTTGTGCCATCAAAGCTCCTGGTTTTGGAGAAAACAGGAAGGCCAATTTAGAAGATCTTGCCATTCTCACTGGCGGAGAGGTTATCAGTGAAGACCGTGGTTTAACCCTCGAGAAAGTCCAACTGGAAACACTTGGTACTGCAAAAAAGGTGACTGTATCTGTTGATGACACAATCATTCTAAATGGAGGTGGTGATAAGAAGCTGATTGAAGAAAGATGTGAGGAGTTGAGAACAACAATGGAGAAGAGTACTGCTGTGTTTGACAAGGAGAAAGCACAGGAGCGGCTGTCAAAACTATCTGGTGGAGTTGCCGTTTTCAAGGTTGGAGGGGCTAGTGAGGCAGAGGTTGGGGAGAGGAAAGATCGGGTAACAGATGCTTTGAATGCTACTAGAGCAGCGGTGGAAGAGGGTATCTTGCCAGGTGGTGGTGTTGCTCTCCTGTATGCTACAAAAGCATTGAAGAACATTCTAACGCAAAATGAAGACCAAAGAAGAGGAGTAGAAATAATCCAGAATGCTCTTAAGGCACCTACATTCACTATAGTTCAAAATGCTGGTTTTGATGGTGCTCTGGTTCTTGGTAAATTGCTGGAACAAGATGACCACAGAATGGGTTATGATGCAGCCAAAGGTGAATATGTTGACATGGTCGAGGCTGGAATCATTGATCCACTGAAAGTTGTTAGAACATCCTTGGTAGACGCAGCCAGTGTGTCGTTACTATTGACAACAACTGAGGCAGCTATAGTGGACAGTCCAACAGAGAAAAAGCCTCCCAGCCGAATGCCAAATATGGAAGATTATGGGGGCTACTAA

Protein Analysis

514

Amino Acids

55.05

Weight (kDa)

5.26

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 1 - 492 1.2e-62 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 1255
AccB7I CCANNNNNTGG 2 cut(s) 1154, 1339
AccBSI CCGCTC 1 cut(s) 1012
AccI GTMKAC 1 cut(s) 1428
AciI CCGC 4 cut(s) 39, 801, 1012, 1127
AclWI GGATC 2 cut(s) 674, 1391
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 1 cut(s) 588
AfaI GTAC 4 cut(s) 107, 175, 865, 979
AfiI CCNNNNNNNGG 3 cut(s) 752, 1154, 1339
AflII CTTAAG 1 cut(s) 1250
AflIII ACRYGT 2 cut(s) 179, 545
AgsI TTSAA 8 cut(s) 482, 594, 674, 938, 1048, 1111, 1189, 1277
AjnI CCWGG 4 cut(s) 51, 96, 745, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 6 cut(s) 233, 493, 625, 743, 931, 1472
AluI AGCT 6 cut(s) 233, 493, 625, 743, 931, 1472
Alw21I GWGCWC 1 cut(s) 1300
AlwI GGATC 2 cut(s) 674, 1391
AlwNI CAGNNNCTG 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 836
AoxI GGCC 2 cut(s) 627, 768
ApeKI GCWGC 6 cut(s) 161, 233, 1124, 1352, 1433, 1469
ApoI RAATTY 1 cut(s) 588
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 889, 932, 1373
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1255
BauI CACGAG 2 cut(s) 128, 608
BbsI GAAGAC 2 cut(s) 825, 1218
Bbv12I GWGCWC 1 cut(s) 1300
BbvI GCAGC 6 cut(s) 148, 220, 1136, 1364, 1445, 1481
BccI CCATC 4 cut(s) 164, 440, 743, 1286
BceAI ACGGC 2 cut(s) 614, 1025
BciT130I CCWGG 4 cut(s) 53, 98, 747, 1149
BfaI CTAG 3 cut(s) 620, 1062, 1119
BfmI CTRYAG 2 cut(s) 1269, 1473
BfrI CTTAAG 1 cut(s) 1250
BglII AGATCT 1 cut(s) 781
BisI GCNGC 8 cut(s) 40, 162, 234, 1013, 1125, 1353, 1434, 1470
BlsI GCNGC 8 cut(s) 41, 163, 235, 1014, 1126, 1354, 1435, 1471
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 4 cut(s) 53, 98, 747, 1149
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 836
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 1257
BmrFI CCNGG 4 cut(s) 53, 98, 747, 1149
BmsI GCATC 4 cut(s) 274, 718, 1093, 1339
BpiI GAAGAC 2 cut(s) 825, 1218
BsaJI CCNNGG 4 cut(s) 51, 663, 823, 1422
BsaXI ACNNNNNCTCC 4 cut(s) 1001, 1026, 1031, 1056
Bsc4I CCNNNNNNNGG 3 cut(s) 752, 1154, 1339
Bse1I ACTGG 3 cut(s) 802, 855, 1437
Bse3DI GCAATG 2 cut(s) 255, 411
BseBI CCWGG 4 cut(s) 53, 98, 747, 1149
BseDI CCNNGG 4 cut(s) 51, 663, 823, 1422
BseGI GGATG 3 cut(s) 118, 673, 1418
BseLI CCNNNNNNNGG 3 cut(s) 752, 1154, 1339
BseMI GCAATG 2 cut(s) 255, 411
BseMII CTCAG 2 cut(s) 554, 1455
BseNI ACTGG 3 cut(s) 802, 855, 1437
BseRI GAGGAG 2 cut(s) 965, 1239
BseXI GCAGC 6 cut(s) 148, 220, 1136, 1364, 1445, 1481
BseYI CCCAGC 3 cut(s) 236, 716, 1505
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 2 cut(s) 629, 770
BshNI GGYRCC 1 cut(s) 1255
BsiHKAI GWGCWC 1 cut(s) 1300
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 752, 1154, 1339
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 3 cut(s) 1117, 1249, 1518
BsnI GGCC 2 cut(s) 629, 770
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 1 cut(s) 1300
Bsp143I GATC 5 cut(s) 298, 679, 781, 1090, 1396
BspACI CCGC 4 cut(s) 39, 801, 1012, 1127
BspANI GGCC 2 cut(s) 629, 770
BspCNI CTCAG 2 cut(s) 553, 1456
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 6, 1257
BspPI GGATC 2 cut(s) 674, 1391
BspT107I GGYRCC 1 cut(s) 1255
BspTI CTTAAG 1 cut(s) 1250
BsrBI CCGCTC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 255, 411
BsrI ACTGG 3 cut(s) 802, 855, 1437
BssECI CCNNGG 4 cut(s) 51, 663, 823, 1422
BssMI GATC 5 cut(s) 298, 679, 781, 1090, 1396
BssSI CACGAG 2 cut(s) 128, 608
BssT1I CCWWGG 1 cut(s) 1422
Bst2BI CACGAG 2 cut(s) 128, 608
Bst2UI CCWGG 4 cut(s) 53, 98, 747, 1149
Bst4CI ACNGT 7 cut(s) 68, 76, 190, 439, 824, 883, 1484
Bst6I CTCTTC 4 cut(s) 330, 968, 1128, 1216
BstAFI CTTAAG 1 cut(s) 1250
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 540, 1464
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 3 cut(s) 118, 673, 1418
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 5 cut(s) 301, 682, 784, 1093, 1399
BstMBI GATC 5 cut(s) 298, 679, 781, 1090, 1396
BstMWI GCNNNNNNNGC 7 cut(s) 284, 740, 1067, 1112, 1121, 1181, 1253
BstNI CCWGG 4 cut(s) 53, 98, 747, 1149
BstNSI RCATGY 2 cut(s) 183, 549
BstSCI CCNGG 4 cut(s) 51, 96, 745, 1147
BstSFI CTRYAG 2 cut(s) 1269, 1473
BstV1I GCAGC 6 cut(s) 148, 220, 1136, 1364, 1445, 1481
BstV2I GAAGAC 2 cut(s) 825, 1218
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BsuRI GGCC 2 cut(s) 629, 770
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 3 cut(s) 118, 673, 1418
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 5 cut(s) 268, 795, 820, 1400, 1444
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 1439
Csp6I GTAC 4 cut(s) 106, 174, 864, 978
CviAII CATG 7 cut(s) 180, 546, 578, 598, 691, 713, 1375
CviQI GTAC 4 cut(s) 106, 174, 864, 978
DdeI CTNAG 2 cut(s) 540, 1464
DpnI GATC 5 cut(s) 300, 681, 783, 1092, 1398
DpnII GATC 5 cut(s) 298, 679, 781, 1090, 1396
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 4 cut(s) 330, 968, 1128, 1216
EarI CTCTTC 4 cut(s) 330, 968, 1128, 1216
EciI GGCGGA 1 cut(s) 816
Eco130I CCWWGG 1 cut(s) 1422
Eco47I GGWCC 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 836
EcoRII CCWGG 4 cut(s) 51, 96, 745, 1147
EcoT14I CCWWGG 1 cut(s) 1422
ErhI CCWWGG 1 cut(s) 1422
FaeI CATG 7 cut(s) 183, 549, 581, 601, 694, 716, 1378
FaqI GGGAC 1 cut(s) 18
FatI CATG 7 cut(s) 179, 545, 577, 597, 690, 712, 1374
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 8 cut(s) 40, 162, 234, 1013, 1125, 1353, 1434, 1470
FokI GGATG 3 cut(s) 125, 680, 1405
Fsp4HI GCNGC 8 cut(s) 40, 162, 234, 1013, 1125, 1353, 1434, 1470
FspBI CTAG 3 cut(s) 620, 1062, 1119
FspI TGCGCA 1 cut(s) 260
GlaI GCGC 1 cut(s) 260
GluI GCNGC 8 cut(s) 40, 162, 234, 1013, 1125, 1353, 1434, 1470
GsaI CCCAGC 3 cut(s) 240, 720, 1509
HaeIII GGCC 2 cut(s) 629, 770
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 1439
HhaI GCGC 1 cut(s) 261
Hin1II CATG 7 cut(s) 183, 549, 581, 601, 694, 716, 1378
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 46, 429, 538, 1389
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 889, 932, 1373
Hpy166II GTNNAC 3 cut(s) 1372, 1429, 1480
Hpy188I TCNGA 2 cut(s) 303, 543
Hpy188III TCNNGA 6 cut(s) 130, 193, 578, 610, 838, 1240
Hpy8I GTNNAC 3 cut(s) 1372, 1429, 1480
HpyAV CCTTC 3 cut(s) 419, 476, 760
HpyCH4III ACNGT 7 cut(s) 68, 76, 190, 439, 824, 883, 1484
HpyCH4V TGCA 7 cut(s) 80, 185, 222, 248, 605, 869, 1352
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 740, 1067, 1112, 1121, 1181, 1253
HpyF3I CTNAG 2 cut(s) 540, 1464
Hsp92II CATG 7 cut(s) 183, 549, 581, 601, 694, 716, 1378
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 5 cut(s) 298, 679, 781, 1090, 1396
LmnI GCTCC 2 cut(s) 748, 1009
Lsp1109I GCAGC 6 cut(s) 148, 220, 1136, 1364, 1445, 1481
LweI GCATC 4 cut(s) 274, 718, 1093, 1339
MaeI CTAG 3 cut(s) 620, 1062, 1119
MaeIII GTNAC 6 cut(s) 55, 70, 292, 877, 1096, 1446
MalI GATC 5 cut(s) 300, 681, 783, 1092, 1398
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 5 cut(s) 298, 679, 781, 1090, 1396
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 1300
MluCI AATT 5 cut(s) 467, 551, 588, 772, 1313
MlyI GAGTC 2 cut(s) 438, 532
MmeI TCCRAC 4 cut(s) 397, 871, 1033, 1511
MseI TTAA 3 cut(s) 723, 830, 1251
MspA1I CMGCKG 1 cut(s) 1127
MspCI CTTAAG 1 cut(s) 1250
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 4 cut(s) 53, 98, 747, 1149
Mva1269I GAATGC 3 cut(s) 1117, 1249, 1518
MvaI CCWGG 4 cut(s) 53, 98, 747, 1149
MwoI GCNNNNNNNGC 7 cut(s) 284, 740, 1067, 1112, 1121, 1181, 1253
NdeII GATC 5 cut(s) 298, 679, 781, 1090, 1396
NlaIII CATG 7 cut(s) 183, 549, 581, 601, 694, 716, 1378
NlaIV GGNNCC 2 cut(s) 6, 1257
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 2 cut(s) 55, 877
NsbI TGCGCA 1 cut(s) 260
NspI RCATGY 2 cut(s) 183, 549
PaeR7I CTCGAG 1 cut(s) 836
PagI TCATGA 1 cut(s) 577
PciI ACATGT 2 cut(s) 179, 545
PctI GAATGC 3 cut(s) 1117, 1249, 1518
PfeI GAWTC 2 cut(s) 46, 1389
PflFI GACNNNGTC 1 cut(s) 1376
PflMI CCANNNNNTGG 2 cut(s) 1154, 1339
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 8 cut(s) 41, 163, 235, 1014, 1126, 1354, 1435, 1471
PleI GAGTC 2 cut(s) 437, 532
PpsI GAGTC 2 cut(s) 437, 532
PscI ACATGT 2 cut(s) 179, 545
Psp6I CCWGG 4 cut(s) 51, 96, 745, 1147
PspFI CCCAGC 3 cut(s) 236, 716, 1505
PspGI CCWGG 4 cut(s) 51, 96, 745, 1147
PspN4I GGNNCC 2 cut(s) 6, 1257
PspPI GGNCC 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 1376
RsaI GTAC 4 cut(s) 107, 175, 865, 979
RsaNI GTAC 4 cut(s) 106, 174, 864, 978
SaqAI TTAA 3 cut(s) 723, 830, 1251
SatI GCNGC 8 cut(s) 40, 162, 234, 1013, 1125, 1353, 1434, 1470
Sau3AI GATC 5 cut(s) 298, 679, 781, 1090, 1396
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 2 cut(s) 438, 532
ScrFI CCNGG 4 cut(s) 53, 98, 747, 1149
SduI GDGCHC 1 cut(s) 1300
SfaNI GCATC 4 cut(s) 274, 718, 1093, 1339
SfcI CTRYAG 2 cut(s) 1269, 1473
Sfr274I CTCGAG 1 cut(s) 836
SinI GGWCC 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 836
SmlI CTYRAG 2 cut(s) 836, 1250
SmoI CTYRAG 2 cut(s) 836, 1250
Sse9I AATT 5 cut(s) 467, 551, 588, 772, 1313
SsiI CCGC 4 cut(s) 39, 801, 1012, 1127
SspMI CTAG 3 cut(s) 620, 1062, 1119
StyD4I CCNGG 4 cut(s) 51, 96, 745, 1147
StyI CCWWGG 1 cut(s) 1422
TaaI ACNGT 7 cut(s) 68, 76, 190, 439, 824, 883, 1484
TaqI TCGA 2 cut(s) 837, 1380
TasI AATT 5 cut(s) 467, 551, 588, 772, 1313
TatI WGTACW 2 cut(s) 105, 977
TauI GCSGC 2 cut(s) 42, 1015
TfiI GAWTC 2 cut(s) 46, 1389
Tru1I TTAA 3 cut(s) 723, 830, 1251
Tru9I TTAA 3 cut(s) 723, 830, 1251
TscAI CASTG 5 cut(s) 268, 802, 820, 1407, 1444
TseFI GTSAC 2 cut(s) 55, 877
TseI GCWGC 6 cut(s) 161, 233, 1124, 1352, 1433, 1469
Tsp45I GTSAC 2 cut(s) 55, 877
TspDTI ATGAA 5 cut(s) 480, 503, 566, 594, 1224
TspRI CASTG 5 cut(s) 268, 802, 820, 1407, 1444
Tth111I GACNNNGTC 1 cut(s) 1376
Van91I CCANNNNNTGG 2 cut(s) 1154, 1339
Vha464I CTTAAG 1 cut(s) 1250
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 588
XceI RCATGY 2 cut(s) 183, 549
XhoI CTCGAG 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 1428
XspI CTAG 3 cut(s) 620, 1062, 1119
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.