Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

65088843 .. 65089334

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATGAGAGCCGTACTTTTAGAGAACAGAACCTAGTGGAGTGGGCCAAGCCATTTTTGAAGGACTCGCACAAACTTGACCGTGTGATGGACCAAAGACTCGAGGGTCAGTACTCTACCGAAGGGGCTAAAAAGGCGGCTGCATTGGCTCATCAGTGCCTGAGTCATAACCCCAAGTCTAGACCAACAATGAGCACTGTGGTCAAGACCTTAGAGCCTCTAATGAACTTGAATGACATACCAATCGGACCCTTTGTGTATGTTGTTCCAACTGAATCAGGAAAAGAAGGTCAAATTGGGTGTCATGATAAGGTAAAAAATGACAACAAAGGTGAAGTAAAAGAGGGAGGGTTGGAGAAATTGAAGGGCAGCCACCGGAGACGAAAAGGTCAGAGGCATAAGCATCGGATTAAGCCACTGAAGTCTAGTACTATCTTTTCGGATACTGCTCTATACAAAGTTCTCGGAACTGGTTTATACTCTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

18.41

Weight (kDa)

9.75

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	105, 387
AciI	CCGC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	16, 113, 430
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	61, 232, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	140, 369
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	3 cut(s)	45, 91, 248
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	91, 248
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	127, 381
BccI	CCATC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciVI	GTATCC	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	35, 180, 426
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	138, 141, 370
BlsI	GCNGC	3 cut(s)	139, 142, 371
BmcAI	AGTACT	2 cut(s)	113, 430
Bme18I	GGWCC	2 cut(s)	91, 248
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	45, 91, 248
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	127, 381
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	197
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	83, 199
BstDEI	CTNAG	2 cut(s)	161, 211
BstF5I	GGATG	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 146
BstV1I	GCAGC	2 cut(s)	127, 381
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	161, 195, 416
CaiI	CAGNNNCTG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	45, 91, 248
Csp6I	GTAC	3 cut(s)	15, 112, 429
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	9 cut(s)	12, 47, 52, 128, 140, 149, 217, 372, 415
CviKI_1	RGCY	9 cut(s)	12, 47, 52, 128, 140, 149, 217, 372, 415
CviQI	GTAC	3 cut(s)	15, 112, 429
DdeI	CTNAG	2 cut(s)	161, 211
DrdI	GACNNNNNNGTC	2 cut(s)	105, 387
DseDI	GACNNNNNNGTC	2 cut(s)	105, 387
Eco47I	GGWCC	2 cut(s)	91, 248
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	308
FaiI	YATR	7 cut(s)	168, 239, 261, 306, 399, 454, 478
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	138, 141, 370
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	138, 141, 370
FspBI	CTAG	3 cut(s)	35, 180, 426
GluI	GCNGC	3 cut(s)	138, 141, 370
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	4 cut(s)	65, 99, 163, 275
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	5 cut(s)	248, 393, 408, 442, 467
Hpy188III	TCNNGA	4 cut(s)	180, 205, 279, 305
HpyAV	CCTTC	4 cut(s)	55, 116, 281, 358
HpyCH4III	ACNGT	2 cut(s)	83, 199
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 146
HpyF3I	CTNAG	2 cut(s)	161, 211
Hsp92II	CATG	1 cut(s)	308
LpnPI	CCDG	4 cut(s)	173, 264, 389, 456
Lsp1109I	GCAGC	2 cut(s)	127, 381
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	3 cut(s)	35, 180, 426
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	294, 359
MlyI	GAGTC	3 cut(s)	59, 93, 172
MmeI	TCCRAC	2 cut(s)	293, 333
MnlI	CCTC	5 cut(s)	97, 228, 337, 341, 387
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	134, 146
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	139, 142, 371
PleI	GAGTC	3 cut(s)	59, 93, 171
PpsI	GAGTC	3 cut(s)	59, 93, 171
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	3 cut(s)	45, 91, 248
PspXI	VCTCGAGB	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	160
RsaI	GTAC	3 cut(s)	16, 113, 430
RsaNI	GTAC	3 cut(s)	15, 112, 429
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	138, 141, 370
Sau96I	GGNCC	3 cut(s)	45, 91, 248
ScaI	AGTACT	2 cut(s)	113, 430
SchI	GAGTC	3 cut(s)	59, 93, 172
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	36, 212, 292, 315, 334, 391
SfaNI	GCATC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	91, 248
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	294, 359
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	35, 180, 426
TaaI	ACNGT	2 cut(s)	83, 199
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	294, 359
TatI	WGTACW	2 cut(s)	111, 428
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	161, 202, 423
TseI	GCWGC	2 cut(s)	140, 369
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	161, 202, 423
VpaK11BI	GGWCC	2 cut(s)	91, 248
XbaI	TCTAGA	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	3 cut(s)	35, 180, 426
ZrmI	AGTACT	2 cut(s)	113, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.