Rh2BG588500

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Forward (+)
80496365 .. 80497640
1276 bp
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UTR
Exon/CDS
Intron
Rh2BG588500.1

Sequence Viewer

Length: 585 bp
ATGAGTAATGGCAGCTTATCAAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCGCATGGAATAGAGTACCTTCACGAAGGGGCAGCCCCACCAGTCATACATCGTGATTTAAAGTCCGCTAATATATTGTTAGACCAATCAATGAGAGCTAAGGTTGCTGATTTTGGACTGTCTAAGGAAGAGGTGTTTGATGGTCGGAATTCAGGCCTCAAGGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAATCTTGCTTCTATGGCTCCAGATGGTGTTGACGAAATACTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAAGAAGTGAGGAGGCTGGCTAAAATTGCTCACAGATGCTTACTGAAATTACCGAGAAAGCGGCCTTCCATCGGAGAAATTTCACAGGCCATATTGAAGATTAAACAGATGCGTCTTGATAAAAGGGATACCATGTCTTTTGCAGGTGAAGAATTTTCACGGGCAGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCACAAAAGAGTAG

Protein Analysis

194

Amino Acids

21.87

Weight (kDa)

6.1

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 74 6.5e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 1 - 73 2.7e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 494, 538
Acc36I ACCTGC 2 cut(s) 494, 538
AciI CCGC 2 cut(s) 156, 421
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 3 cut(s) 238, 438, 512
AfaI GTAC 2 cut(s) 32, 107
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 362, 457
AluBI AGCT 5 cut(s) 15, 57, 188, 340, 556
AluI AGCT 5 cut(s) 15, 57, 188, 340, 556
AoxI GGCC 5 cut(s) 244, 252, 422, 447, 567
ApeKI GCWGC 3 cut(s) 12, 70, 122
ApoI RAATTY 3 cut(s) 238, 438, 512
AsuHPI GGTGA 2 cut(s) 257, 518
BalI TGGCCA 1 cut(s) 569
BbvI GCAGC 3 cut(s) 24, 57, 134
BccI CCATC 4 cut(s) 224, 263, 305, 437
BciVI GTATCC 1 cut(s) 481
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 2 cut(s) 494, 538
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 4 cut(s) 13, 71, 123, 422
BlsI GCNGC 4 cut(s) 14, 72, 124, 423
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 2 cut(s) 386, 459
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 67, 255
BseLI CCNNNNNNNGG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 24, 57, 134
BseYI CCCAGC 1 cut(s) 57
BshFI GGCC 5 cut(s) 246, 254, 424, 449, 569
BslI CCNNNNNNNGG 1 cut(s) 431
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 5 cut(s) 246, 254, 424, 449, 569
Bsp1407I TGTACA 1 cut(s) 30
BspACI CCGC 2 cut(s) 156, 421
BspANI GGCC 5 cut(s) 246, 254, 424, 449, 569
BspLI GGNNCC 1 cut(s) 306
BspMI ACCTGC 2 cut(s) 494, 538
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 35, 210
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 378, 567, 571
BstDEI CTNAG 2 cut(s) 189, 213
BstF5I GGATG 2 cut(s) 67, 255
BstMWI GCNNNNNNNGC 5 cut(s) 194, 302, 386, 553, 562
BstV1I GCAGC 3 cut(s) 24, 57, 134
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 5 cut(s) 246, 254, 424, 449, 569
BtsCI GGATG 2 cut(s) 67, 255
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 2 cut(s) 494, 538
Cac8I GCNNGC 3 cut(s) 378, 567, 571
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 31, 106
CviAII CATG 2 cut(s) 95, 493
CviQI GTAC 2 cut(s) 31, 106
DdeI CTNAG 2 cut(s) 189, 213
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 238
FaeI CATG 2 cut(s) 98, 496
FaiI YATR 7 cut(s) 96, 137, 164, 285, 302, 452, 494
FatI CATG 2 cut(s) 94, 492
Fnu4HI GCNGC 4 cut(s) 13, 71, 123, 422
FokI GGATG 2 cut(s) 74, 242
Fsp4HI GCNGC 4 cut(s) 13, 71, 123, 422
FspBI CTAG 1 cut(s) 341
GluI GCNGC 4 cut(s) 13, 71, 123, 422
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 5 cut(s) 246, 254, 424, 449, 569
HgaI GACGC 1 cut(s) 461
Hin1II CATG 2 cut(s) 98, 496
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HphI GGTGA 2 cut(s) 257, 518
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 237, 434
Hpy188III TCNNGA 5 cut(s) 83, 113, 143, 308, 476
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 4 cut(s) 35, 110, 119, 435
HpyCH4III ACNGT 2 cut(s) 35, 210
HpyCH4V TGCA 3 cut(s) 73, 354, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 302, 386, 553, 562
HpyF3I CTNAG 2 cut(s) 189, 213
Hsp92II CATG 2 cut(s) 98, 496
LmnI GCTCC 2 cut(s) 310, 553
Lsp1109I GCAGC 3 cut(s) 24, 57, 134
LweI GCATC 2 cut(s) 386, 459
MaeI CTAG 1 cut(s) 341
MboII GAAGA 5 cut(s) 50, 230, 374, 469, 521
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 6 cut(s) 75, 238, 384, 407, 438, 512
MluNI TGGCCA 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 6 cut(s) 214, 257, 273, 363, 366, 532
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MseI TTAA 3 cut(s) 149, 288, 462
Msp20I TGGCCA 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 356
MwoI GCNNNNNNNGC 5 cut(s) 194, 302, 386, 553, 562
NlaIII CATG 2 cut(s) 98, 496
NlaIV GGNNCC 1 cut(s) 306
PaqCI CACCTGC 2 cut(s) 494, 538
PceI AGGCCT 1 cut(s) 246
PctI GAATGC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 14, 72, 124, 423
PspFI CCCAGC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 306
RsaI GTAC 2 cut(s) 32, 107
RsaNI GTAC 2 cut(s) 31, 106
SaqAI TTAA 3 cut(s) 149, 288, 462
SatI GCNGC 4 cut(s) 13, 71, 123, 422
SfaNI GCATC 2 cut(s) 386, 459
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 6 cut(s) 75, 238, 384, 407, 438, 512
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 2 cut(s) 156, 421
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 246
TaaI ACNGT 2 cut(s) 35, 210
TasI AATT 6 cut(s) 75, 238, 384, 407, 438, 512
TatI WGTACW 1 cut(s) 30
TauI GCSGC 1 cut(s) 424
Tru1I TTAA 3 cut(s) 149, 288, 462
Tru9I TTAA 3 cut(s) 149, 288, 462
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 12, 70, 122
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 40
XapI RAATTY 3 cut(s) 238, 438, 512
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.