Rh2BG613200

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Forward (+)
83546363 .. 83568503
22141 bp
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UTR
Exon/CDS
Intron
Rh2BG613200.1

Sequence Viewer

Length: 363 bp
ATGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGAAGAAAATGAAACACCTGGATGGACCCAACTGAAGCTTCCTGGTCAAGCTCCTTCTGCACGTTGTGGCCATACCATCACATCTGGAGGACACTATGTTTCGATATTGATAATTTCTGCAATGAGATTCTGCATTGAAGAAGACTCGGCTTCAGAGATTGAAGAATTCCAGTACCTAAAATTACTACTGGAAAAATATATAAAAGATCATTTGGCCATGCTGGTTTTCCGTAATAATTATGACCCACCTCTTTATGTGTGGACAATCCATTTTATCGAGTCGGACATGACAGATGAAATACCCAATTAA
Functional Annotation

Protein Analysis

120

Amino Acids

14.09

Weight (kDa)

5.34

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 121, 267
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 2 cut(s) 107, 189
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 2 cut(s) 191, 215
AjnI CCWGG 2 cut(s) 70, 94
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 2 cut(s) 91, 104
AluI AGCT 2 cut(s) 91, 104
AoxI GGCC 2 cut(s) 121, 267
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 2 cut(s) 123, 269
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 3 cut(s) 10, 69, 137
BciT130I CCWGG 2 cut(s) 72, 96
Bme1390I CCNGG 2 cut(s) 72, 96
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 72, 96
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 223, 246
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 72, 96
BseGI GGATG 2 cut(s) 18, 80
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 223, 246
BseRI GAGGAG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 123, 269
BsnI GGCC 2 cut(s) 123, 269
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 2 cut(s) 123, 269
BspLI GGNNCC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 2 cut(s) 223, 246
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 72, 96
BstF5I GGATG 2 cut(s) 18, 80
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 72, 96
BstSCI CCNGG 2 cut(s) 70, 94
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 123, 269
BtsCI GGATG 2 cut(s) 18, 80
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 271, 340
CviJI RGCY 5 cut(s) 91, 104, 123, 203, 269
CviKI_1 RGCY 5 cut(s) 91, 104, 123, 203, 269
CviQI GTAC 1 cut(s) 226
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DraIII CACNNNGTG 1 cut(s) 119
EaeI YGGCCR 2 cut(s) 121, 267
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 107, 189
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 70, 94
FaeI CATG 2 cut(s) 274, 343
FaiI YATR 8 cut(s) 126, 150, 252, 254, 272, 294, 309, 341
FatI CATG 2 cut(s) 270, 339
FokI GGATG 2 cut(s) 25, 87
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 123, 269
Hin1II CATG 2 cut(s) 274, 343
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 180, 197, 332
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 2 cut(s) 208, 337
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 113, 173, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 2 cut(s) 274, 343
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 57, 81, 84, 108, 123, 227, 236, 260
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 68, 203, 206, 227
MlsI TGGCCA 2 cut(s) 123, 269
MluCI AATT 5 cut(s) 165, 218, 233, 289, 358
MluNI TGGCCA 2 cut(s) 123, 269
MlyI GAGTC 2 cut(s) 191, 341
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 3 cut(s) 39, 134, 312
Mox20I TGGCCA 2 cut(s) 123, 269
MscI TGGCCA 2 cut(s) 123, 269
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 73
Msp20I TGGCCA 2 cut(s) 123, 269
MspR9I CCNGG 2 cut(s) 72, 96
MvaI CCWGG 2 cut(s) 72, 96
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 274, 343
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 180
PleI GAGTC 2 cut(s) 191, 340
PpsI GAGTC 2 cut(s) 191, 340
Psp6I CCWGG 2 cut(s) 70, 94
PspGI CCWGG 2 cut(s) 70, 94
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 361
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 2 cut(s) 191, 341
ScrFI CCNGG 2 cut(s) 72, 96
SetI ASST 6 cut(s) 73, 93, 106, 118, 231, 304
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 5 cut(s) 165, 218, 233, 289, 358
StyD4I CCNGG 2 cut(s) 70, 94
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 155, 330
TasI AATT 5 cut(s) 165, 218, 233, 289, 358
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 78, 363
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.