Rh2BG624700

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
N/A
Physical Location & Seq
Reverse (-)
84668546 .. 84671786
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG624700.1

Sequence Viewer

Length: 396 bp
ATGGTGCTTAAATGGAGGGCAGCTCTGACTCAGGCTGCCAATATATGCGGGTGGGATGCTAAAAACCAACGGACTTCCGACCAGGCTGAACATTTCCATCTATCCCCTCAGGCCATCTGGGAGCCATATCAGCGAAGTCGCTGCGTAGTTGCAGGACTAAAGGAGTACATTGAGACCTTTAATCAGCAGAGACAAGAGAAGTTGAGGTACCTTCAAGCTGTTTTGCTCCAAGAGCGCCAGAAAAACGCAACTCAGAGTTGCTTGAAGCCCGTGGTAGGGCAGTGCCTCTACTGTTTGTACAATGTCAAAAGAAACAGTGAGGGATGGAAATGGCTGCCGTGGAAGAGTGCGAAGTCTTCACTTGAAACAGACAATGAAAGATGGAAGTTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

131

Amino Acids

15.51

Weight (kDa)

9.54

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 1 cut(s) 48
AfaI GTAC 3 cut(s) 167, 209, 299
AfiI CCNNNNNNNGG 2 cut(s) 275, 276
AgsI TTSAA 3 cut(s) 215, 265, 365
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 23, 218
AluI AGCT 2 cut(s) 23, 218
Alw26I GTCTC 2 cut(s) 167, 184
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 20, 35, 141, 334
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 108
BanI GGYRCC 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 4 cut(s) 22, 32, 128, 321
BccI CCATC 4 cut(s) 105, 122, 318, 375
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 167, 184
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 4 cut(s) 21, 36, 142, 335
BlsI GCNGC 4 cut(s) 22, 37, 143, 336
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 123, 209
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 270, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 276
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 270, 338
BseGI GGATG 2 cut(s) 61, 329
BseLI CCNNNNNNNGG 2 cut(s) 275, 276
BseMII CTCAG 3 cut(s) 44, 122, 266
BseXI GCAGC 4 cut(s) 22, 32, 128, 321
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 275, 276
BsmAI GTCTC 2 cut(s) 167, 184
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 297
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 3 cut(s) 43, 121, 265
BspLI GGNNCC 2 cut(s) 123, 209
BspT107I GGYRCC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 270, 338
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 293, 317
Bst6I CTCTTC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 30, 108, 252
BstDSI CCRYGG 2 cut(s) 270, 338
BstF5I GGATG 2 cut(s) 61, 329
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstMAI GTCTC 2 cut(s) 167, 184
BstMWI GCNNNNNNNGC 2 cut(s) 130, 232
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 22, 32, 128, 321
BstV2I GAAGAC 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 270, 338
BtsCI GGATG 2 cut(s) 61, 329
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 287, 322
CfoI GCGC 1 cut(s) 237
Csp6I GTAC 3 cut(s) 166, 208, 298
CviJI RGCY 8 cut(s) 23, 35, 86, 113, 124, 218, 268, 334
CviKI_1 RGCY 8 cut(s) 23, 35, 86, 113, 124, 218, 268, 334
CviQI GTAC 3 cut(s) 166, 208, 298
DdeI CTNAG 3 cut(s) 30, 108, 252
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 81
FaiI YATR 3 cut(s) 44, 46, 127
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 4 cut(s) 21, 36, 142, 335
FokI GGATG 2 cut(s) 68, 336
Fsp4HI GCNGC 4 cut(s) 21, 36, 142, 335
GlaI GCGC 1 cut(s) 236
GluI GCNGC 4 cut(s) 21, 36, 142, 335
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 113
HhaI GCGC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 27, 79, 255
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 293, 317
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 232
HpyF3I CTNAG 3 cut(s) 30, 108, 252
HspAI GCGC 1 cut(s) 235
KpnI GGTACC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 121, 231
LpnPI CCDG 7 cut(s) 17, 68, 95, 95, 103, 138, 251
Lsp1109I GCAGC 4 cut(s) 22, 32, 128, 321
LweI GCATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 348, 355
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 9, 117, 198, 296, 313, 384
MseI TTAA 2 cut(s) 9, 180
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 130, 232
NlaIV GGNNCC 2 cut(s) 123, 209
PkrI GCNGC 4 cut(s) 22, 37, 143, 336
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 123, 209
RsaI GTAC 3 cut(s) 167, 209, 299
RsaNI GTAC 3 cut(s) 166, 208, 298
SaqAI TTAA 2 cut(s) 9, 180
SatI GCNGC 4 cut(s) 21, 36, 142, 335
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 83
SetI ASST 6 cut(s) 25, 179, 209, 213, 220, 395
SfaNI GCATC 1 cut(s) 46
SsiI CCGC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 293, 317
TatI WGTACW 2 cut(s) 165, 297
Tru1I TTAA 2 cut(s) 9, 180
Tru9I TTAA 2 cut(s) 9, 180
TscAI CASTG 2 cut(s) 287, 322
TseI GCWGC 4 cut(s) 20, 35, 141, 334
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 287, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.