Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5152720 .. 5154112

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG063000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATGTTTTCGTTATTGTATGCTAATGATTCTTTTTCTGCCTGTAGCCTTCCATGGCAGGGTTTAAAAGCTGCCACAAAAAAGCAAAAATATGACAAAATTTGTGAGAAGAAGTTATCAACCCCTATTGAGGTTCTGTGCAAATCTCACCCAGTGGAGTTCGCATCATACTTCCATTACTGCCACTCACTGACATTTGATCAGCGACCTGATTATGGATTCTTGAAACGTCTATTCCGAGACTTGTTTACTCGTGAAGGATATGAATTTGATTACATATTTGATTGGACCATCATAAAGTTCCAACAATCGCAAAAGAATAGACCTCAGTCTCAGTTACCCCCGGGTCCTGGAGGAAGCAACAGTCGTGCAATGCCAATGAATGTAGATAATCATCAAGGAGGTGCTAGTGCTACTTATCCATCTGAGGTGACGGATCGAATTAAATCAAGCAATGCCACTGGTCCAGGGGTCCGGATGCAATTTAAACCACCAACAAGCAGGAACTTAAATTACGATAATCCTCTTGAAAAGAATATTGCACCTGAAGCATACACACCTCCGTCTACGTCATTTTCTGGCACCTCAAGAAGGAATCACTCCAAACCTCTTTTGCCTGCTGAAACTGCAAACACTAGTCACGGACATGGCAATAAAGTAGGTCCTTCAGGTAGCTGGATTCAATCACTGCAGCGCATGTCTTCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

237

Amino Acids

26.63

Weight (kDa)

9.46

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	566
AccIII	TCCGGA	1 cut(s)	474
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	2 cut(s)	99, 266
AcuI	CTGAAG	2 cut(s)	567, 651
AdeI	CACNNNGTG	1 cut(s)	154
AfiI	CCNNNNNNNGG	5 cut(s)	59, 130, 215, 350, 591
AgsI	TTSAA	3 cut(s)	226, 530, 683
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	349, 466
AluBI	AGCT	2 cut(s)	71, 675
AluI	AGCT	2 cut(s)	71, 675
Alw26I	GTCTC	2 cut(s)	234, 336
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	71, 691
ApoI	RAATTY	2 cut(s)	99, 266
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	5 cut(s)	288, 347, 464, 472, 662
AsuC2I	CCSGG	2 cut(s)	344, 345
AsuHPI	GGTGA	2 cut(s)	140, 442
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	5 cut(s)	288, 347, 464, 472, 662
BanI	GGYRCC	1 cut(s)	581
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	58, 703
BccI	CCATC	2 cut(s)	299, 430
BciT130I	CCWGG	2 cut(s)	351, 468
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	344, 345
BcoDI	GTCTC	2 cut(s)	234, 336
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	2 cut(s)	408, 636
BfmI	CTRYAG	2 cut(s)	43, 689
BisI	GCNGC	2 cut(s)	72, 692
BlsI	GCNGC	2 cut(s)	73, 693
Bme1390I	CCNGG	4 cut(s)	344, 345, 351, 468
Bme18I	GGWCC	5 cut(s)	288, 347, 464, 472, 662
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	5 cut(s)	288, 347, 464, 472, 662
BmiI	GGNNCC	3 cut(s)	348, 473, 583
BmrFI	CCNGG	4 cut(s)	344, 345, 351, 468
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	173, 468
BmuI	ACTGGG	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	2 cut(s)	344, 345
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	53, 342, 343, 467
BsaWI	WCCGGW	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 130, 215, 350, 591
Bse1I	ACTGG	2 cut(s)	152, 466
Bse3DI	GCAATG	2 cut(s)	378, 460
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	351, 468
BseDI	CCNNGG	4 cut(s)	53, 342, 343, 467
BseGI	GGATG	1 cut(s)	483
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	5 cut(s)	59, 130, 215, 350, 591
BseMI	GCAATG	2 cut(s)	378, 460
BseMII	CTCAG	3 cut(s)	341, 347, 417
BseNI	ACTGG	2 cut(s)	152, 466
BseXI	GCAGC	2 cut(s)	58, 703
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	344, 475
BslI	CCNNNNNNNGG	5 cut(s)	59, 130, 215, 350, 591
BsmAI	GTCTC	2 cut(s)	234, 336
BsnI	GGCC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	343
Bsp13I	TCCGGA	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	199, 436
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	3 cut(s)	340, 346, 418
BspEI	TCCGGA	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	348, 473, 583
BspMAI	CTGCAG	1 cut(s)	693
BspPI	GGATC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	378, 460
BsrI	ACTGG	2 cut(s)	152, 466
BssECI	CCNNGG	4 cut(s)	53, 342, 343, 467
BssMI	GATC	2 cut(s)	199, 436
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	351, 468
Bst4CI	ACNGT	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	327, 333, 426
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	2 cut(s)	202, 439
BstMAI	GTCTC	2 cut(s)	234, 336
BstMBI	GATC	2 cut(s)	199, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 626
BstNI	CCWGG	2 cut(s)	351, 468
BstNSI	RCATGY	1 cut(s)	700
BstPAI	GACNNNNGTC	1 cut(s)	328
BstSCI	CCNGG	4 cut(s)	342, 343, 349, 466
BstSFI	CTRYAG	2 cut(s)	43, 689
BstV1I	GCAGC	2 cut(s)	58, 703
BstV2I	GAAGAC	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	483
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	4 cut(s)	159, 188, 459, 686
Cac8I	GCNNGC	1 cut(s)	618
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	5 cut(s)	288, 347, 464, 472, 662
Cfr9I	CCCGGG	1 cut(s)	343
CviAII	CATG	3 cut(s)	54, 647, 697
CviJI	RGCY	4 cut(s)	48, 71, 675, 707
CviKI_1	RGCY	4 cut(s)	48, 71, 675, 707
DdeI	CTNAG	3 cut(s)	327, 333, 426
DpnI	GATC	2 cut(s)	201, 438
DpnII	GATC	2 cut(s)	199, 436
DraI	TTTAAA	2 cut(s)	66, 487
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	705
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	5 cut(s)	288, 347, 464, 472, 662
Eco57I	CTGAAG	2 cut(s)	567, 651
Eco88I	CYCGRG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	589
EcoO109I	RGGNCCY	2 cut(s)	347, 662
EcoRII	CCWGG	2 cut(s)	349, 466
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 650, 700
FatI	CATG	3 cut(s)	53, 646, 696
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	2 cut(s)	72, 692
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	72, 692
FspBI	CTAG	2 cut(s)	408, 636
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	2 cut(s)	72, 692
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	2 cut(s)	344, 475
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	3 cut(s)	57, 650, 700
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	29, 219, 595, 679
HpaII	CCGG	2 cut(s)	344, 475
HphI	GGTGA	2 cut(s)	140, 442
Hpy166II	GTNNAC	2 cut(s)	249, 567
Hpy188I	TCNGA	2 cut(s)	239, 427
Hpy188III	TCNNGA	5 cut(s)	223, 254, 475, 527, 588
Hpy8I	GTNNAC	2 cut(s)	249, 567
HpyAV	CCTTC	4 cut(s)	59, 251, 585, 675
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	2 cut(s)	229, 569
HpyCH4V	TGCA	6 cut(s)	141, 371, 481, 542, 629, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 626
HpyF3I	CTNAG	3 cut(s)	327, 333, 426
HpySE526I	ACGT	2 cut(s)	229, 569
Hsp92II	CATG	3 cut(s)	57, 650, 700
HspAI	GCGC	1 cut(s)	694
Kpn2I	TCCGGA	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 436
Lsp1109I	GCAGC	2 cut(s)	58, 703
LweI	GCATC	2 cut(s)	173, 468
MaeI	CTAG	2 cut(s)	408, 636
MaeII	ACGT	2 cut(s)	229, 569
MaeIII	GTNAC	3 cut(s)	336, 430, 638
MalI	GATC	2 cut(s)	201, 438
MboI	GATC	2 cut(s)	199, 436
MboII	GAAGA	2 cut(s)	121, 693
MluCI	AATT	5 cut(s)	99, 266, 441, 482, 511
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	124, 336, 347, 395, 421, 534, 570, 595, 618
MroI	TCCGGA	1 cut(s)	474
MseI	TTAA	4 cut(s)	65, 444, 486, 509
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	2 cut(s)	344, 475
MspR9I	CCNGG	4 cut(s)	344, 345, 351, 468
MvaI	CCWGG	2 cut(s)	351, 468
MwoI	GCNNNNNNNGC	2 cut(s)	548, 626
NciI	CCSGG	2 cut(s)	344, 345
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	199, 436
NlaIII	CATG	3 cut(s)	57, 650, 700
NlaIV	GGNNCC	3 cut(s)	348, 473, 583
NmuCI	GTSAC	2 cut(s)	430, 638
NspI	RCATGY	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PfeI	GAWTC	4 cut(s)	29, 219, 595, 679
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	73, 693
PpuMI	RGGWCCY	2 cut(s)	347, 662
PshAI	GACNNNNGTC	1 cut(s)	328
Psp5II	RGGWCCY	2 cut(s)	347, 662
Psp6I	CCWGG	2 cut(s)	349, 466
PspGI	CCWGG	2 cut(s)	349, 466
PspN4I	GGNNCC	3 cut(s)	348, 473, 583
PspPI	GGNCC	5 cut(s)	288, 347, 464, 472, 662
PspPPI	RGGWCCY	2 cut(s)	347, 662
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstI	CTGCAG	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	65, 444, 486, 509
SatI	GCNGC	2 cut(s)	72, 692
Sau3AI	GATC	2 cut(s)	199, 436
Sau96I	GGNCC	5 cut(s)	288, 347, 464, 472, 662
ScrFI	CCNGG	4 cut(s)	344, 345, 351, 468
SfaNI	GCATC	2 cut(s)	173, 468
SfcI	CTRYAG	2 cut(s)	43, 689
SinI	GGWCC	5 cut(s)	288, 347, 464, 472, 662
SmaI	CCCGGG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	5 cut(s)	99, 266, 441, 482, 511
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	408, 636
StyD4I	CCNGG	4 cut(s)	342, 343, 349, 466
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	2 cut(s)	232, 572
TaqI	TCGA	1 cut(s)	439
TasI	AATT	5 cut(s)	99, 266, 441, 482, 511
TfiI	GAWTC	4 cut(s)	29, 219, 595, 679
Tru1I	TTAA	4 cut(s)	65, 444, 486, 509
Tru9I	TTAA	4 cut(s)	65, 444, 486, 509
TscAI	CASTG	4 cut(s)	159, 195, 466, 693
TseFI	GTSAC	2 cut(s)	430, 638
TseI	GCWGC	2 cut(s)	71, 691
Tsp45I	GTSAC	2 cut(s)	430, 638
TspDTI	ATGAA	2 cut(s)	279, 395
TspGWI	ACGGA	3 cut(s)	449, 552, 657
TspMI	CCCGGG	1 cut(s)	343
TspRI	CASTG	4 cut(s)	159, 195, 466, 693
VpaK11BI	GGWCC	5 cut(s)	288, 347, 464, 472, 662
XagI	CCTNNNNNAGG	1 cut(s)	589
XapI	RAATTY	2 cut(s)	99, 266
XceI	RCATGY	1 cut(s)	700
XmaI	CCCGGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	2 cut(s)	408, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.