Rh2CG176800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
N/A
Physical Location & Seq
Forward (+)
16195732 .. 16196432
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG176800.1

Sequence Viewer

Length: 288 bp
ATGCCAAATGGAAGCTTACATGATCATCTTTTCAGGAGGATCCCTGATGAGGAACCATTATCTTGGGACAACAGACTCAAGATAGCTACTGGAGCTGCTCAGGGCTTAGCTTTCTTGCACAGTTTTCAAATCATAGACAGAGATGTCAAACCCTCTAATATACTGCTTGATGAAAATTACAATCCAAAAATCTCAAGTTTTTACCTGGCAAAATGGTGGCCAGCTGATGGAGAGTTTTATGAGTCAACTCGGATTTGTGGCTCACTGGCTTATGTTGATCCAGAATAA

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

5.04

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 83 9.8e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 8 - 95 2.1e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 227
AclWI GGATC 3 cut(s) 34, 47, 272
AcoI YGGCCR 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 49, 227
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 15, 86, 95, 110, 224
AluI AGCT 5 cut(s) 15, 86, 95, 110, 224
AlwI GGATC 3 cut(s) 34, 47, 272
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 220
BamHI GGATCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 22
BisI GCNGC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 41, 54
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 106
BpuEI CTTGAG 2 cut(s) 62, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 227
Bse1I ACTGG 2 cut(s) 94, 270
BseBI CCWGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 49, 227
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 94, 270
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 220
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 49, 227
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 22, 39, 277
Bsp1720I GCTNAGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 41, 54
BspPI GGATC 3 cut(s) 34, 47, 272
BsrI ACTGG 2 cut(s) 94, 270
BssMI GATC 3 cut(s) 22, 39, 277
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 99, 106
BstKTI GATC 3 cut(s) 25, 42, 280
BstMBI GATC 3 cut(s) 22, 39, 277
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 63
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 222
CviAII CATG 1 cut(s) 20
CviJI RGCY 9 cut(s) 15, 86, 95, 105, 110, 220, 224, 261, 269
CviKI_1 RGCY 9 cut(s) 15, 86, 95, 105, 110, 220, 224, 261, 269
DdeI CTNAG 2 cut(s) 99, 106
DpnI GATC 3 cut(s) 24, 41, 279
DpnII GATC 3 cut(s) 22, 39, 277
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 23
FaiI YATR 5 cut(s) 21, 134, 161, 240, 273
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 19
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 1 cut(s) 23
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 75, 242
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 3 cut(s) 34, 79, 281
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 99, 106
Hsp92II CATG 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 39, 277
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 19, 57, 75, 86, 191, 218, 234, 251
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 3 cut(s) 24, 41, 279
MboI GATC 3 cut(s) 22, 39, 277
MflI RGATCY 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 2 cut(s) 69, 251
MnlI CCTC 3 cut(s) 30, 43, 163
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 22, 39, 277
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 41, 54
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 69, 250
PpsI GAGTC 2 cut(s) 69, 250
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 41, 54
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 224
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 22, 39, 277
SchI GAGTC 2 cut(s) 69, 251
ScrFI CCNGG 1 cut(s) 206
SetI ASST 6 cut(s) 17, 88, 97, 112, 207, 226
SmlI CTYRAG 2 cut(s) 77, 193
SmoI CTYRAG 2 cut(s) 77, 193
Sse9I AATT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 122
TasI AATT 1 cut(s) 175
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.