Rh2CG230600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
N/A
Physical Location & Seq
Reverse (-)
23328571 .. 23329032
462 bp
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UTR
Exon/CDS
Intron
Rh2CG230600.1

Sequence Viewer

Length: 462 bp
ATGGACAATTGGCACAGCCGACCTGCCCCATCAGTATTGTATGCGAAAGCTGTTTTCTCTGGGATCAGTAGTAGACATCCAGATGGCGGATCCCTTCTACCTTTAAGAACTTTGAGGCTGCATGGAATGAAGAAGCCTATGTATCTCTGGGACACCACCGAATCAACTGGCCCAGATTTTCCAATGTTGGAAATTCTAGAGGTGAAGTTTTGTGGATTGAAGAATCTAGAGTTACCTGCAATATCCTTCCAGAATCTAACCATTTTAGAAATAACTTTTTGCTGGCGATTGCAATATTTGGCTACTTACACAGTTGCTCAAGGTTTAGTGAGACTCAAAAAAATGAAAGTTGATGAGTGTAAAAGTATGAAAGAAATCTTCACAAGCGAAGGAATGGAAGAAGATGCAAGTGAATGTAAGATTGTTTTCAGCCGGTTGCAACGTACATTTGGAACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

153

Amino Acids

17.52

Weight (kDa)

8.34

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 75 - 137 2.1e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 31, 244
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 87
AclWI GGATC 3 cut(s) 71, 84, 97
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 3 cut(s) 71, 84, 97
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 214
BamHI GGATCC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 37, 77
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 197, 227
BfuAI ACCTGC 2 cut(s) 31, 244
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 63, 89
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 2 cut(s) 31, 244
BspPI GGATC 3 cut(s) 71, 84, 97
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 432
BssMI GATC 2 cut(s) 63, 89
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 66, 92
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 63, 89
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 76
BveI ACCTGC 2 cut(s) 31, 244
Cac8I GCNNGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 444
CviAII CATG 1 cut(s) 122
CviJI RGCY 7 cut(s) 18, 50, 118, 136, 171, 302, 432
CviKI_1 RGCY 7 cut(s) 18, 50, 118, 136, 171, 302, 432
CviQI GTAC 1 cut(s) 444
DpnI GATC 2 cut(s) 65, 91
DpnII GATC 2 cut(s) 63, 89
EciI GGCGGA 1 cut(s) 102
FaeI CATG 1 cut(s) 125
FaiI YATR 4 cut(s) 42, 123, 140, 368
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 121
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 197, 227
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 433
Hin1II CATG 1 cut(s) 125
HinfI GANTC 4 cut(s) 161, 223, 253, 333
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 4 cut(s) 80, 197, 227, 250
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 104, 256, 383
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 121, 239, 292, 407, 439
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 2 cut(s) 63, 89
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 197, 227
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 65, 91
MboI GATC 2 cut(s) 63, 89
MboII GAAGA 5 cut(s) 142, 232, 370, 410, 413
MfeI CAATTG 1 cut(s) 7
MflI RGATCY 1 cut(s) 89
MluCI AATT 2 cut(s) 7, 192
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 108, 193
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 433
MunI CAATTG 1 cut(s) 7
NdeII GATC 2 cut(s) 63, 89
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 161, 223, 253
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 63, 89
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 327
SetI ASST 7 cut(s) 25, 52, 103, 204, 238, 325, 445
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 7, 192
SsiI CCGC 1 cut(s) 87
SspI AATATT 1 cut(s) 296
SspMI CTAG 2 cut(s) 197, 227
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 445
TasI AATT 2 cut(s) 7, 192
TfiI GAWTC 3 cut(s) 161, 223, 253
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 143, 359, 383
XapI RAATTY 1 cut(s) 192
XbaI TCTAGA 2 cut(s) 196, 226
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 2 cut(s) 197, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.