Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26497140 .. 26504950

Gene Structure 7811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGCACAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTCAAAGCCCATAGCAATCAAAACATGATCTTTACCAATTGGTCAACCACCACCCCTGTTTGCAACTGGGTTGGCGTCATTTGTGGTGCACGCCTTCATCGAGTCATAGAGTTGAACGTCTCTTACTCTGGTCTCGCGGGCACCATTCCTCCTGAGCTAGGCAACTTATCATTCCTTGTTGATCTGGACATCCAAAATAACAGTTTCCAGGGTACCTTGCCTCACGAGTTGGCTCGCCTGCACCGGTTGAAGTTCATTAACTTGGGATACAACAAGTTTATGGGAGTGATACCATCATGGTTTGGGTCCTTGTCCAAACTTCAAGGTTTTAGGTTGTTTGGTAATCAATTTTCAGGTTCGATACCAGCTATCATCTTCAACTTATCTACGTTGCAAGAAATTGATCTGAGTTATAACCAACTCTCAGGTAGAATCCCCAGAGAAATCAGGAACCTAACAATGTTGAAGGCAATCTGCCTTGATAATAATAATTTTAAAGAAATTCCAAGTGAGATCGGCACTTTGAATCAGCTTGAAAAGTTGTTTGTGAAAGAAAATGCCTTAAAAGGGCCTATTCCTATGAGTGTCTTCAATATGTCATCTTTGACTACTGTAAATTTCTATAGAAACAAGTTGAGTGGTAGAATTCCTGACAATATATGTCAACATCTTCCAAATATCCAAGAGTTGAACTTGGGTATCAATCAATTTGATGGTCCACTTCCATCCAAGTTTTGGCAATGCAAACAACTTCTTACTTTGGGGTTGGGGGATAACAGATTTAGTGGAAGCATACCCAAAGATATTGGGAACTTAACTCGGATAAAGTTGATTAGCCTTGTCATCAACAGCTTGACAGATGGGTGGGGTGTTAGACAATTTGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

314

Amino Acids

35.02

Weight (kDa)

9.38

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 46	4e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	65 - 151	1.7e-06	Leucine-rich repeat region
LRR_8	PF13855	77 - 135	3.8e-06	Leucine rich repeat
LRR_14	PF23598	145 - 248	3.5e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	194, 266
AccB7I	CCANNNNNTGG	1 cut(s)	789
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	5, 191
AcsI	RAATTY	3 cut(s)	555, 670, 699
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	4 cut(s)	36, 212, 621, 789
AgeI	ACCGGT	2 cut(s)	36, 297
AgsI	TTSAA	9 cut(s)	169, 304, 377, 433, 520, 580, 590, 646, 745
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	4 cut(s)	211, 422, 586, 906
AluI	AGCT	4 cut(s)	211, 422, 586, 906
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	178, 191
Alw44I	GTGCAC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	623
ApaLI	GTGCAC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	555, 670, 699
AsiGI	ACCGGT	2 cut(s)	36, 297
Asp718I	GGTACC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	360, 623, 770
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	360, 770
BaeGI	GKGCMC	2 cut(s)	145, 197
BaeI	ACNNNNGTAYC	2 cut(s)	736, 769
BanI	GGYRCC	2 cut(s)	194, 266
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	4 cut(s)	355, 761, 787, 908
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	178, 191
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	360, 770
BmgT120I	GGNCC	3 cut(s)	360, 623, 770
BmiI	GGNNCC	4 cut(s)	196, 268, 361, 506
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	36, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 212, 621, 789
Bse118I	RCCGGY	2 cut(s)	36, 297
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	800
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	243, 779
BseLI	CCNNNNNNNGG	4 cut(s)	36, 212, 621, 789
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	3 cut(s)	198, 452, 492
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	2 cut(s)	145, 197
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	625
BshNI	GGYRCC	2 cut(s)	194, 266
BshTI	ACCGGT	2 cut(s)	36, 297
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	37, 298
BslI	CCNNNNNNNGG	4 cut(s)	36, 212, 621, 789
BsmAI	GTCTC	2 cut(s)	178, 191
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	145, 197
Bsp143I	GATC	4 cut(s)	81, 235, 457, 567
BspACI	CCGC	2 cut(s)	5, 191
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	3 cut(s)	199, 453, 491
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	4 cut(s)	196, 268, 361, 506
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	194, 266
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	800
BsrFI	RCCGGY	2 cut(s)	36, 297
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	2 cut(s)	36, 297
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	81, 235, 457, 567
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	257, 667
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	145, 193, 289, 293
BstDEI	CTNAG	3 cut(s)	207, 461, 478
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	243, 779
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	4 cut(s)	84, 238, 460, 570
BstMAI	GTCTC	2 cut(s)	178, 191
BstMBI	GATC	4 cut(s)	81, 235, 457, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 59
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	2 cut(s)	145, 197
BstUI	CGCG	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	625
BtsCI	GGATG	2 cut(s)	243, 779
Cac8I	GCNNGC	4 cut(s)	145, 193, 289, 293
Cfr10I	RCCGGY	2 cut(s)	36, 297
Cfr13I	GGNCC	3 cut(s)	360, 623, 770
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	267
CspAI	ACCGGT	2 cut(s)	36, 297
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviAII	CATG	2 cut(s)	79, 351
CviJI	RGCY	8 cut(s)	62, 211, 287, 422, 586, 625, 891, 906
CviKI_1	RGCY	8 cut(s)	62, 211, 287, 422, 586, 625, 891, 906
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	3 cut(s)	207, 461, 478
DpnI	GATC	4 cut(s)	83, 237, 459, 569
DpnII	GATC	4 cut(s)	81, 235, 457, 567
DraI	TTTAAA	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	360, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	2 cut(s)	360, 623
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	82, 354
FatI	CATG	2 cut(s)	78, 350
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	230, 766
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	2 cut(s)	37, 298
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	82, 354
HincII	GTYRAC	2 cut(s)	99, 719
HindII	GTYRAC	2 cut(s)	99, 719
HinfI	GANTC	3 cut(s)	156, 486, 580
HpaII	CCGG	2 cut(s)	37, 298
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	99, 143, 719, 773
Hpy188I	TCNGA	2 cut(s)	462, 876
Hpy188III	TCNNGA	5 cut(s)	206, 239, 278, 502, 704
Hpy8I	GTNNAC	4 cut(s)	99, 143, 719, 773
HpyAV	CCTTC	2 cut(s)	158, 514
HpyCH4III	ACNGT	2 cut(s)	257, 667
HpyCH4IV	ACGT	2 cut(s)	171, 443
HpyCH4V	TGCA	5 cut(s)	117, 143, 295, 448, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 59
HpyF3I	CTNAG	3 cut(s)	207, 461, 478
HpySE526I	ACGT	2 cut(s)	171, 443
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	82, 354
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	81, 235, 457, 567
LguI	GCTCTTC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	2 cut(s)	171, 443
MalI	GATC	4 cut(s)	83, 237, 459, 569
MboI	GATC	4 cut(s)	81, 235, 457, 567
MboII	GAAGA	4 cut(s)	38, 421, 634, 716
MfeI	CAATTG	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	145, 197
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	213, 285
MseI	TTAA	6 cut(s)	21, 312, 549, 617, 869, 943
MspI	CCGG	2 cut(s)	37, 298
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	50, 59
NdeII	GATC	4 cut(s)	81, 235, 457, 567
NlaIII	CATG	2 cut(s)	82, 354
NlaIV	GGNNCC	4 cut(s)	196, 268, 361, 506
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	486, 580
PflMI	CCANNNNNTGG	1 cut(s)	789
PinAI	ACCGGT	2 cut(s)	36, 297
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	196, 268, 361, 506
PspPI	GGNCC	3 cut(s)	360, 623, 770
PspPPI	RGGWCCY	1 cut(s)	360
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	6 cut(s)	21, 312, 549, 617, 869, 943
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	81, 235, 457, 567
Sau96I	GGNCC	3 cut(s)	360, 623, 770
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	145, 197
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	2 cut(s)	360, 770
SsiI	CCGC	2 cut(s)	5, 191
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	257, 667
TaiI	ACGT	2 cut(s)	174, 446
TaqI	TCGA	2 cut(s)	154, 413
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	486, 580
Tru1I	TTAA	6 cut(s)	21, 312, 549, 617, 869, 943
Tru9I	TTAA	6 cut(s)	21, 312, 549, 617, 869, 943
TspDTI	ATGAA	2 cut(s)	140, 298
Van91I	CCANNNNNTGG	1 cut(s)	789
VneI	GTGCAC	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	360, 770
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	3 cut(s)	555, 670, 699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.