Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

40857593 .. 40862424

Gene Structure 4832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCAATTCAGTGAGTGTAACTTGAATCTCATCTGTTTTGGGTGTGAACAAGCTTACCTATATTACTGCCACCAGCGGTCACTGACTGTGATCACCAAGAGGACGAATGCTGGAGAAGCAAACAAGGACAGATCGAATTGGGTAGAAATCCTGAACCACGGCTTTATCTCACGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTAAGTTATATTTCAGAACATGTGGTTGGAATTGGCTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGATTCTCCAAGACAAGCGTTACAAGAACCTGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACGGAGAAGAGGTTTACTTGAATTTGTTCCTGAAATTGTTTACCGTATCCGAAGGAACTATAGCAGGATCAACCAGTAGATGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

175

Amino Acids

19.72

Weight (kDa)

8.48

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	83 - 144	1.1e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	76, 210
AclWI	GGATC	2 cut(s)	399, 514
AcsI	RAATTY	1 cut(s)	460
AcvI	CACGTG	1 cut(s)	173
AflIII	ACRYGT	2 cut(s)	187, 256
AgsI	TTSAA	3 cut(s)	25, 432, 460
AjnI	CCWGG	2 cut(s)	291, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	2 cut(s)	399, 514
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	85
BbrPI	CACGTG	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	293, 365
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	435, 498
BfuI	GTATCC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	293, 365
BmrFI	CCNGG	2 cut(s)	293, 365
BmsI	GCATC	1 cut(s)	509
BpmI	CTGGAG	3 cut(s)	132, 333, 386
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 435, 465
Bse1I	ACTGG	2 cut(s)	316, 513
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	293, 365
BseDI	CCNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	316, 513
Bsh1285I	CGRYCG	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	90, 131, 391, 506
BspACI	CCGC	2 cut(s)	76, 210
BspPI	GGATC	2 cut(s)	399, 514
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	316, 513
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	4 cut(s)	90, 131, 391, 506
Bst2UI	CCWGG	2 cut(s)	293, 365
Bst4CI	ACNGT	4 cut(s)	88, 205, 238, 484
Bst6I	CTCTTC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	157
BstKTI	GATC	4 cut(s)	93, 134, 394, 509
BstMBI	GATC	4 cut(s)	90, 131, 391, 506
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	293, 365
BstNSI	RCATGY	2 cut(s)	191, 260
BstSCI	CCNGG	2 cut(s)	291, 363
BstSFI	CTRYAG	2 cut(s)	435, 498
BsuI	GTATCC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	16, 80
CviAII	CATG	2 cut(s)	188, 257
CviJI	RGCY	3 cut(s)	53, 162, 273
CviKI_1	RGCY	3 cut(s)	53, 162, 273
DpnI	GATC	4 cut(s)	92, 133, 393, 508
DpnII	GATC	4 cut(s)	90, 131, 391, 506
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	291, 363
FaeI	CATG	2 cut(s)	191, 260
FaiI	YATR	6 cut(s)	61, 189, 246, 258, 380, 500
FatI	CATG	2 cut(s)	187, 256
FbaI	TGATCA	1 cut(s)	90
FspBI	CTAG	1 cut(s)	228
GsuI	CTGGAG	3 cut(s)	132, 333, 386
Hin1II	CATG	2 cut(s)	191, 260
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	2 cut(s)	25, 337
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	47, 454, 480
Hpy188I	TCNGA	2 cut(s)	253, 490
Hpy188III	TCNNGA	4 cut(s)	151, 228, 331, 469
Hpy8I	GTNNAC	3 cut(s)	47, 454, 480
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	4 cut(s)	88, 205, 238, 484
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	4, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	191, 260
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	90, 131, 391, 506
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	4 cut(s)	17, 78, 353, 369
MalI	GATC	4 cut(s)	92, 133, 393, 508
MboI	GATC	4 cut(s)	90, 131, 391, 506
MboII	GAAGA	2 cut(s)	346, 458
MluCI	AATT	5 cut(s)	5, 136, 267, 460, 473
MmeI	TCCRAC	2 cut(s)	244, 369
MnlI	CCTC	3 cut(s)	93, 209, 442
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	293, 365
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	293, 365
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	4 cut(s)	90, 131, 391, 506
NlaIII	CATG	2 cut(s)	191, 260
NmuCI	GTSAC	1 cut(s)	78
NspI	RCATGY	2 cut(s)	191, 260
PciI	ACATGT	2 cut(s)	187, 256
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	25, 337
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	2 cut(s)	187, 256
Psp6I	CCWGG	2 cut(s)	291, 363
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	291, 363
SaqAI	TTAA	1 cut(s)	526
Sau3AI	GATC	4 cut(s)	90, 131, 391, 506
ScrFI	CCNGG	2 cut(s)	293, 365
SetI	ASST	6 cut(s)	55, 60, 175, 220, 366, 453
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	2 cut(s)	435, 498
Sse9I	AATT	5 cut(s)	5, 136, 267, 460, 473
SsiI	CCGC	2 cut(s)	76, 210
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	291, 363
TaaI	ACNGT	4 cut(s)	88, 205, 238, 484
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	134, 214
TasI	AATT	5 cut(s)	5, 136, 267, 460, 473
TfiI	GAWTC	2 cut(s)	25, 337
Tru1I	TTAA	1 cut(s)	526
Tru9I	TTAA	1 cut(s)	526
TscAI	CASTG	2 cut(s)	16, 87
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	16, 87
XapI	RAATTY	1 cut(s)	460
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	2 cut(s)	191, 260
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.