Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43337015 .. 43344633

Gene Structure 7619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG331400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCGCAGTACGGAATACAATCAATGCTGAAGGAGGGGCACAAGCACCTCTCCGGTTTGGACGAAGCGGTGGTCAAGAACATCGAGGCCTGCAAGCAACTCTCTACCATCATTCGCACTTCTCTCGGTCCCAACGGCATGAATAAGATGGTAATCAATCACTTAGATAAGCTCTTTGTCACAAATGATGGTGCCACCATTGTTAATGAACTCGAGGTTCAGCACCCTGCCGCCAAGCTTTTGGTTTTGGCAGGCAAGGCTCAACAGGAGGAGATTGGCGATGGTGCTAATCTCACCATTTCGTTCGCCGGAGAACTGCTTTCGCATGCCGAGGAGCTTATCAGGATGGGCTTGCACCCCAGTGAGATCATTAGTGGATACACGAAAGCAATTAAGAAGACAATTGAAATCTTGGAAGAACTGGTTGAGGAAGGTTCTGAGACTATGGACGTGCGTAATAAAGAACAAGTGGTTAAAAGAATGAGAGCGCCTGTCGCCAGCAAGCAGTTTGGACAAGAAGAGATATTGTCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCGGCAAACTTTAATGTGGATAATGTACGAGTGGCAAAGTTCTTGGGAGGGGGTTTGCATAATTGTACTGTAGTTCGAGGTATGGCATTAAAGACTGATGCTGTTGGCAGCATAAAGAAAATGCAGAAGGCCAAGGTTGCTGTGTTTGCTGGTGGTGTTGATACCTCTGCAACTGAGACCAAGGGAACTGTCTTAATTCATACTGCTGAGCAGCTAGAAAATTATGCAAAAACTGAAGAAGCTAAAGTTGAGGAGCTCATCAAAGCAGTTGCAGATTCAGGAGCCAAAGTAATTGTCAGTGGAGCAGCAGTTGGAGAAATGGCATTACATTTCTGTGAGCGTTACAAGCTCATGGTGCTGAAAATCAGTTCAAAATTTGAATTGAGACGATTTTGCCGTACAGTTGGTGCTGTTGCTATGTTGAAGCTTTGCCAGCCTAACCCAGATGACCTTGGATATGTTGACTCTGTCTCAGTTGAGGAAATTGCTGGTGTTAGGGTTACTATTGTGAAGAATGAAGAAGGTGGTAACTCTGTATCCACTGTGCTTCTAAGGGCAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTGATGATGGGGTGAACACTTACAAGGCTATGTGCAGGGATAGTCGTATTGTTCCTGGAGCTGCAGCTACTGAAATTGAGTTAGCCAGGAGGGTCAAGGAGTTCTCTTTCAAAGAAACAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

430

Amino Acids

46.51

Weight (kDa)

5.95

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	34 - 428	3.2e-119	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	2 cut(s)	68, 231
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	2 cut(s)	50, 828
AfaI	GTAC	5 cut(s)	11, 600, 640, 973, 1135
AgsI	TTSAA	6 cut(s)	407, 945, 953, 997, 1160, 1279
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	1222, 1253
AleI	CACNNNNGTG	1 cut(s)	360
Alw21I	GWGCWC	1 cut(s)	831
Alw26I	GTCTC	4 cut(s)	434, 743, 952, 1048
AlwNI	CAGNNNCTG	1 cut(s)	1238
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	87, 702
ApeKI	GCWGC	5 cut(s)	681, 784, 878, 1229, 1232
ApoI	RAATTY	1 cut(s)	947
ArsI	GACNNNNNNTTYG	4 cut(s)	57, 89, 852, 884
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	286, 1192
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	831
BbvI	GCAGC	5 cut(s)	693, 796, 890, 1216, 1244
BccI	CCATC	6 cut(s)	116, 142, 182, 275, 340, 1169
BceAI	ACGGC	2 cut(s)	151, 954
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	2 cut(s)	1224, 1255
BciVI	GTATCC	2 cut(s)	371, 1120
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	4 cut(s)	434, 743, 952, 1048
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	2 cut(s)	642, 1230
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	2 cut(s)	371, 1120
BisI	GCNGC	6 cut(s)	231, 682, 785, 879, 1230, 1233
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	6 cut(s)	232, 683, 786, 880, 1231, 1234
BmcAI	AGTACT	1 cut(s)	1135
Bme1390I	CCNGG	3 cut(s)	575, 1224, 1255
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	130, 193, 856
BmrFI	CCNGG	3 cut(s)	575, 1224, 1255
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	535, 661
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	1245
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	4 cut(s)	330, 705, 753, 1024
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	4 cut(s)	846, 867, 876, 897
Bse1I	ACTGG	2 cut(s)	360, 426
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	1224, 1255
BseDI	CCNNGG	4 cut(s)	330, 705, 753, 1024
BseGI	GGATG	1 cut(s)	351
BseJI	GATNNNNATC	1 cut(s)	152
BseMII	CTCAG	4 cut(s)	429, 738, 771, 1059
BseNI	ACTGG	2 cut(s)	360, 426
BseRI	GAGGAG	3 cut(s)	284, 347, 839
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	5 cut(s)	693, 796, 890, 1216, 1244
BsgI	GTGCAG	1 cut(s)	1222
BshFI	GGCC	2 cut(s)	89, 704
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	831
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	54, 309, 575
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	4 cut(s)	434, 743, 952, 1048
BsmBI	CGTCTC	1 cut(s)	952
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	89, 704
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	42, 831
Bsp143I	GATC	1 cut(s)	366
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	2 cut(s)	68, 231
BspANI	GGCC	2 cut(s)	89, 704
BspCNI	CTCAG	4 cut(s)	430, 739, 772, 1058
BspLI	GGNNCC	3 cut(s)	130, 193, 856
BspMAI	CTGCAG	1 cut(s)	1234
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	360, 426
BssECI	CCNNGG	4 cut(s)	330, 705, 753, 1024
BssMI	GATC	1 cut(s)	366
BssNAI	GTATAC	1 cut(s)	554
BssT1I	CCWWGG	3 cut(s)	705, 753, 1024
Bst1107I	GTATAC	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	1224, 1255
Bst4CI	ACNGT	4 cut(s)	643, 763, 976, 1117
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	8 cut(s)	91, 95, 253, 327, 353, 499, 503, 1007
BstDEI	CTNAG	6 cut(s)	163, 438, 747, 780, 1045, 1124
BstF5I	GGATG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	4 cut(s)	434, 743, 952, 1048
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 494, 710, 719, 919, 928, 1006
BstNI	CCWGG	2 cut(s)	1224, 1255
BstNSI	RCATGY	2 cut(s)	329, 552
BstSCI	CCNGG	3 cut(s)	573, 1222, 1253
BstSFI	CTRYAG	2 cut(s)	642, 1230
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	5 cut(s)	693, 796, 890, 1216, 1244
BstV2I	GAAGAC	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	554
BsuI	GTATCC	2 cut(s)	371, 1120
BsuRI	GGCC	2 cut(s)	89, 704
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	367, 877, 1113
Cac8I	GCNNGC	8 cut(s)	91, 95, 253, 327, 353, 499, 503, 1007
CaiI	CAGNNNCTG	1 cut(s)	1238
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	5 cut(s)	10, 599, 639, 972, 1134
CviAII	CATG	4 cut(s)	139, 326, 549, 925
CviQI	GTAC	5 cut(s)	10, 599, 639, 972, 1134
DdeI	CTNAG	6 cut(s)	163, 438, 747, 780, 1045, 1124
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	3 cut(s)	705, 753, 1024
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	831
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	50, 828
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	1222, 1253
EcoT14I	CCWWGG	3 cut(s)	705, 753, 1024
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	3 cut(s)	705, 753, 1024
Esp3I	CGTCTC	1 cut(s)	952
FaeI	CATG	4 cut(s)	142, 329, 552, 928
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	4 cut(s)	138, 325, 548, 924
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	231, 682, 785, 879, 1230, 1233
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	6 cut(s)	231, 682, 785, 879, 1230, 1233
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	6 cut(s)	231, 682, 785, 879, 1230, 1233
GsuI	CTGGAG	1 cut(s)	1245
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	89, 704
HapII	CCGG	3 cut(s)	54, 309, 575
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	4 cut(s)	142, 329, 552, 928
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HindIII	AAGCTT	2 cut(s)	236, 998
HinfI	GANTC	2 cut(s)	848, 1037
HpaII	CCGG	3 cut(s)	54, 309, 575
HphI	GGTGA	2 cut(s)	286, 1192
Hpy166II	GTNNAC	3 cut(s)	554, 1036, 1183
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	3 cut(s)	76, 343, 852
Hpy8I	GTNNAC	3 cut(s)	554, 1036, 1183
HpyAV	CCTTC	4 cut(s)	25, 425, 694, 1088
HpyCH4III	ACNGT	4 cut(s)	643, 763, 976, 1117
HpyCH4IV	ACGT	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 494, 710, 719, 919, 928, 1006
HpyF3I	CTNAG	6 cut(s)	163, 438, 747, 780, 1045, 1124
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	4 cut(s)	142, 329, 552, 928
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	5 cut(s)	334, 826, 854, 875, 1226
Lsp1109I	GCAGC	5 cut(s)	693, 796, 890, 1216, 1244
LweI	GCATC	2 cut(s)	535, 661
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	178, 914, 1072, 1100
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	6 cut(s)	409, 428, 530, 821, 1096, 1103
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	42, 831
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	1 cut(s)	865
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	6 cut(s)	204, 393, 474, 585, 662, 767
MslI	CAYNNNNRTG	2 cut(s)	360, 906
MspI	CCGG	3 cut(s)	54, 309, 575
MspR9I	CCNGG	3 cut(s)	575, 1224, 1255
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	1224, 1255
MwoI	GCNNNNNNNGC	7 cut(s)	257, 494, 710, 719, 919, 928, 1006
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	4 cut(s)	142, 329, 552, 928
NlaIV	GGNNCC	3 cut(s)	130, 193, 856
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	2 cut(s)	329, 552
OliI	CACNNNNGTG	1 cut(s)	360
PaeI	GCATGC	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PfeI	GAWTC	1 cut(s)	848
PflFI	GACNNNGTC	1 cut(s)	1040
PfoI	TCCNGGA	1 cut(s)	1222
PkrI	GCNGC	6 cut(s)	232, 683, 786, 880, 1231, 1234
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	1222, 1253
PspGI	CCWGG	2 cut(s)	1222, 1253
PspN4I	GGNNCC	3 cut(s)	130, 193, 856
PspPI	GGNCC	1 cut(s)	128
PspXI	VCTCGAGB	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	1234
PstNI	CAGNNNCTG	1 cut(s)	1238
PsyI	GACNNNGTC	1 cut(s)	1040
RsaI	GTAC	5 cut(s)	11, 600, 640, 973, 1135
RsaNI	GTAC	5 cut(s)	10, 599, 639, 972, 1134
RseI	CAYNNNNRTG	2 cut(s)	360, 906
SacI	GAGCTC	1 cut(s)	831
SaqAI	TTAA	6 cut(s)	204, 393, 474, 585, 662, 767
SatI	GCNGC	6 cut(s)	231, 682, 785, 879, 1230, 1233
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	1135
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	3 cut(s)	575, 1224, 1255
SduI	GDGCHC	2 cut(s)	42, 831
SfaNI	GCATC	2 cut(s)	535, 661
SfcI	CTRYAG	2 cut(s)	642, 1230
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	2 cut(s)	360, 906
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	329
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	68, 231
SspMI	CTAG	1 cut(s)	788
SstI	GAGCTC	1 cut(s)	831
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	573, 1222, 1253
StyI	CCWWGG	3 cut(s)	705, 753, 1024
TaaI	ACNGT	4 cut(s)	643, 763, 976, 1117
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	84, 213, 649
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	2 cut(s)	638, 1133
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	6 cut(s)	204, 393, 474, 585, 662, 767
Tru9I	TTAA	6 cut(s)	204, 393, 474, 585, 662, 767
TscAI	CASTG	3 cut(s)	367, 877, 1120
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	5 cut(s)	681, 784, 878, 1229, 1232
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	155, 222, 761, 1104
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	367, 877, 1120
Tth111I	GACNNNGTC	1 cut(s)	1040
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	947
XceI	RCATGY	2 cut(s)	329, 552
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	788
ZrmI	AGTACT	1 cut(s)	1135
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.