Rh2CG343200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
N/A
Physical Location & Seq
Forward (+)
46158077 .. 46158951
875 bp
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UTR
Exon/CDS
Intron
Rh2CG343200.1

Sequence Viewer

Length: 840 bp
ATGGGAAGCTGTTTCTCAGTCAGTTTACAGTTACAGTGCGATGTTCTGCTTTCTCGCTGCACAGACTGCACCATTGGACGAGCAACGTATCTTTGTATGATGGAAGAAAATATGAAAGATCTGAGAAGTGCTTTTGAAGATTTACAAGCATCAGTAAATGAAGTAAAGGCCAGAGTCGAAATGGATGAGCTGCATGGATTGAAGCGATTAGACCAGGTACAGACATGGATGTTAAGGGTGGAAGAAGTCAAACTTAAAGTCAACGCACTGGTAACAGCCAGCGATCAAGAGATTCAGAGGCTATGTTTTGGTGGTTGTTGTTCTCATAACTGCAAGTCCGGGCACAAGTTCGGGAAACAAGTGGCTGCAGAGTTGAAGAAAGTCAATGATTTGAAGATGAAGGCAGATTTTAAGGAGGTGGCAGCGATTCAAGCTTTAGCTTTATCTACAGGAAATAGAAGACAAACTCAGTCACCTATGGGAATGCAATCCATGTTTGACAAAGTGTGGAGCCAGCTTGGGGAAGAAGGAGTGGGAATGGTTGGCTTGTATGGAATGGGAGGAGTGGGGAAGACCACTCTCTTGCGTGAGATCCACGACAAGTACCAGGTCGCCCCAAATGATTATGATCTTATAATGTGGATACATGTCTCACGAAATCCCAGAATTGAAGACATTCAAAACGAGATTGGAAGAACAGTTACACGTTTCGACAACGACACTTGGAGGAACAGAGACAGCAGAGTAAAAGCAGATGACATCTTGAGGGTCTTGACAAGATATAAGTTTGTACTACTTCTGGATGACCTGTGGGAAGGTGTTGATCTGGAGAAGGTCTAA

Protein Analysis

279

Amino Acids

31.76

Weight (kDa)

6.25

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 163 - 279 3.6e-28 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AclWI GGATC 1 cut(s) 586
AfaI GTAC 3 cut(s) 219, 605, 792
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 2 cut(s) 646, 704
AgsI TTSAA 7 cut(s) 137, 202, 376, 394, 431, 671, 680
AjnI CCWGG 2 cut(s) 213, 606
AluBI AGCT 5 cut(s) 9, 190, 434, 440, 517
AluI AGCT 5 cut(s) 9, 190, 434, 440, 517
Alw26I GTCTC 2 cut(s) 655, 729
AlwI GGATC 1 cut(s) 586
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 4 cut(s) 57, 190, 365, 422
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 675
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 685, 717
BbsI GAAGAC 3 cut(s) 466, 578, 678
BbvI GCAGC 4 cut(s) 44, 177, 352, 434
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 215, 608
BciVI GTATCC 1 cut(s) 636
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 655, 729
BfmI CTRYAG 2 cut(s) 366, 447
BfuI GTATCC 1 cut(s) 636
BglII AGATCT 1 cut(s) 118
BisI GCNGC 4 cut(s) 58, 191, 366, 423
BlsI GCNGC 4 cut(s) 59, 192, 367, 424
Bme1390I CCNGG 3 cut(s) 215, 340, 608
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 3 cut(s) 215, 340, 608
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 3 cut(s) 466, 578, 678
BpuEI CTTGAG 1 cut(s) 784
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 627
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 2 cut(s) 215, 608
BseGI GGATG 3 cut(s) 190, 234, 808
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 30, 113, 482
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 4 cut(s) 44, 177, 352, 434
BsgI GTGCAG 2 cut(s) 43, 52
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 655, 729
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 5 cut(s) 118, 283, 591, 628, 823
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 29, 114, 481
BspLI GGNNCC 1 cut(s) 512
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 273
BssMI GATC 5 cut(s) 118, 283, 591, 628, 823
Bst2UI CCWGG 2 cut(s) 215, 608
Bst4CI ACNGT 3 cut(s) 30, 36, 700
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 280, 515
BstDEI CTNAG 3 cut(s) 16, 122, 468
BstF5I GGATG 3 cut(s) 190, 234, 808
BstKTI GATC 5 cut(s) 121, 286, 594, 631, 826
BstMAI GTCTC 2 cut(s) 655, 729
BstMBI GATC 5 cut(s) 118, 283, 591, 628, 823
BstMWI GCNNNNNNNGC 2 cut(s) 66, 431
BstNI CCWGG 2 cut(s) 215, 608
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 3 cut(s) 213, 338, 606
BstSFI CTRYAG 2 cut(s) 366, 447
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 44, 177, 352, 434
BstV2I GAAGAC 3 cut(s) 466, 578, 678
BstX2I RGATCY 2 cut(s) 118, 591
BstYI RGATCY 2 cut(s) 118, 591
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 190, 234, 808
BtsIMutI CAGTG 2 cut(s) 41, 266
Cac8I GCNNGC 2 cut(s) 280, 515
CsiI ACCWGGT 2 cut(s) 213, 606
Csp6I GTAC 3 cut(s) 218, 604, 791
CviAII CATG 4 cut(s) 194, 225, 493, 647
CviQI GTAC 3 cut(s) 218, 604, 791
DdeI CTNAG 3 cut(s) 16, 122, 468
DpnI GATC 5 cut(s) 120, 285, 593, 630, 825
DpnII GATC 5 cut(s) 118, 283, 591, 628, 823
EcoRII CCWGG 2 cut(s) 213, 606
FaeI CATG 4 cut(s) 197, 228, 496, 650
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 4 cut(s) 193, 224, 492, 646
Fnu4HI GCNGC 4 cut(s) 58, 191, 366, 423
FokI GGATG 3 cut(s) 197, 241, 815
Fsp4HI GCNGC 4 cut(s) 58, 191, 366, 423
GluI GCNGC 4 cut(s) 58, 191, 366, 423
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 339
Hin1II CATG 4 cut(s) 197, 228, 496, 650
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 3 cut(s) 174, 292, 427
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 26, 262
Hpy188I TCNGA 2 cut(s) 123, 297
Hpy188III TCNNGA 7 cut(s) 287, 352, 654, 763, 772, 800, 827
Hpy8I GTNNAC 2 cut(s) 26, 262
HpyAV CCTTC 4 cut(s) 394, 521, 809, 826
HpyCH4III ACNGT 3 cut(s) 30, 36, 700
HpyCH4IV ACGT 2 cut(s) 86, 706
HpyCH4V TGCA 6 cut(s) 60, 69, 193, 333, 368, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 431
HpyF3I CTNAG 3 cut(s) 16, 122, 468
HpySE526I ACGT 2 cut(s) 86, 706
Hsp92II CATG 4 cut(s) 197, 228, 496, 650
Kzo9I GATC 5 cut(s) 118, 283, 591, 628, 823
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 4 cut(s) 44, 177, 352, 434
LweI GCATC 1 cut(s) 158
MabI ACCWGGT 2 cut(s) 213, 606
MaeII ACGT 2 cut(s) 86, 706
MaeIII GTNAC 4 cut(s) 30, 271, 471, 700
MalI GATC 5 cut(s) 120, 285, 593, 630, 825
MboI GATC 5 cut(s) 118, 283, 591, 628, 823
MflI RGATCY 2 cut(s) 118, 591
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 666
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 5 cut(s) 291, 409, 554, 720, 759
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 233, 255, 411
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 3 cut(s) 215, 340, 608
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 2 cut(s) 215, 608
MwoI GCNNNNNNNGC 2 cut(s) 66, 431
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 118, 283, 591, 628, 823
NlaIII CATG 4 cut(s) 197, 228, 496, 650
NlaIV GGNNCC 1 cut(s) 512
NmuCI GTSAC 1 cut(s) 471
NspI RCATGY 1 cut(s) 650
PciI ACATGT 1 cut(s) 646
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 292, 427
PkrI GCNGC 4 cut(s) 59, 192, 367, 424
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PscI ACATGT 1 cut(s) 646
PsiI TTATAA 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 213, 606
PspGI CCWGG 2 cut(s) 213, 606
PspN4I GGNNCC 1 cut(s) 512
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 2 cut(s) 118, 591
RsaI GTAC 3 cut(s) 219, 605, 792
RsaNI GTAC 3 cut(s) 218, 604, 791
SaqAI TTAA 3 cut(s) 233, 255, 411
SatI GCNGC 4 cut(s) 58, 191, 366, 423
Sau3AI GATC 5 cut(s) 118, 283, 591, 628, 823
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 215, 340, 608
SduI GDGCHC 1 cut(s) 345
SexAI ACCWGGT 2 cut(s) 213, 606
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 2 cut(s) 366, 447
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 1 cut(s) 666
StyD4I CCNGG 3 cut(s) 213, 338, 606
TaaI ACNGT 3 cut(s) 30, 36, 700
TaiI ACGT 2 cut(s) 89, 709
TaqI TCGA 2 cut(s) 177, 711
TasI AATT 1 cut(s) 666
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 2 cut(s) 292, 427
Tru1I TTAA 3 cut(s) 233, 255, 411
Tru9I TTAA 3 cut(s) 233, 255, 411
TscAI CASTG 2 cut(s) 41, 273
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 4 cut(s) 57, 190, 365, 422
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 3 cut(s) 128, 174, 413
TspRI CASTG 2 cut(s) 41, 273
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.