Rh2CG385000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
N/A
Physical Location & Seq
Reverse (-)
52418136 .. 52418699
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG385000.1

Sequence Viewer

Length: 564 bp
ATGGCTCTGCACTATTTAGATTTATCCGCTTGTGCTATTAGTGATATTGGGATCGAGATACTTGTGAAAGGTTCTTTGTCAAGAACCATTAAAACGCTCATCCTTAAAGGATGCTCTCGAATCACTGATAGAGGAATTCTAATGTTGCATAATCTGTCCAATCTCGAGGAGCTGAATTTGGGTATACATGATGCCAAAATCACGGATTTTGGTTTTGCGAAGATCGGCAGTTTAGTTTGTCTCAAGAAACTGTGTCTGTATGGTCAAAGGAAATTATCAGACATTACATTTGTTACTATTGGTGCTCAGTGTCAGAAGTTAGAAGAACTTGACATTACTGACTGTGATAAGGTGACAGGAGATGGGATTCGGGCCTTTGCAGGTTTAAAGTTCTTGCACACCATTAAGATGAAGTACTGTGATGAGGTTAATTCATCGGATTTGGACTTTCTGATCAGTTCTTGTTCTAATTTGAAGCATGTGATCTTAGATTACCATCTGGCAGAGAAGATTTTGGGAGGAATGAGGGAGGAAAACAAAGGATATCTAGAGTTGGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

187

Amino Acids

20.77

Weight (kDa)

6.29

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 3 - 51 2.5e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 184
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 135, 175
AfaI GTAC 1 cut(s) 416
AgsI TTSAA 1 cut(s) 475
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 135, 175
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 2 cut(s) 356, 504
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 372
BmsI GCATC 2 cut(s) 101, 181
BpuEI CTTGAG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 495
BseGI GGATG 2 cut(s) 99, 116
BseJI GATNNNNATC 1 cut(s) 495
BseMII CTCAG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 4 cut(s) 51, 222, 453, 483
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 59
BssMI GATC 4 cut(s) 51, 222, 453, 483
BssNAI GTATAC 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 252, 344, 419
BstDEI CTNAG 2 cut(s) 306, 487
BstF5I GGATG 2 cut(s) 99, 116
BstKTI GATC 4 cut(s) 54, 225, 456, 486
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 4 cut(s) 51, 222, 453, 483
BstNSI RCATGY 1 cut(s) 482
BstZ17I GTATAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 99, 116
BtsIMutI CAGTG 2 cut(s) 123, 314
BveI ACCTGC 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 188, 479
CviJI RGCY 3 cut(s) 5, 172, 374
CviKI_1 RGCY 3 cut(s) 5, 172, 374
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 306, 487
DpnI GATC 4 cut(s) 53, 224, 455, 485
DpnII GATC 4 cut(s) 51, 222, 453, 483
DraI TTTAAA 1 cut(s) 387
Eco32I GATATC 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 135
EcoRV GATATC 1 cut(s) 545
FaeI CATG 2 cut(s) 191, 482
FaiI YATR 5 cut(s) 150, 185, 189, 261, 480
FatI CATG 2 cut(s) 187, 478
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 184
FokI GGATG 2 cut(s) 86, 123
FspBI CTAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 374
Hin1II CATG 2 cut(s) 191, 482
HinfI GANTC 2 cut(s) 120, 367
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 4 cut(s) 280, 315, 439, 453
Hpy188III TCNNGA 6 cut(s) 55, 81, 117, 164, 244, 548
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 252, 344, 419
HpyCH4V TGCA 4 cut(s) 10, 148, 380, 397
HpyF3I CTNAG 2 cut(s) 306, 487
Hsp92II CATG 2 cut(s) 191, 482
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 4 cut(s) 51, 222, 453, 483
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 342, 366, 485
LweI GCATC 2 cut(s) 101, 181
MaeI CTAG 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 292, 352
MalI GATC 4 cut(s) 53, 224, 455, 485
MboI GATC 4 cut(s) 51, 222, 453, 483
MboII GAAGA 3 cut(s) 232, 335, 520
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 5 cut(s) 135, 175, 272, 430, 469
MnlI CCTC 6 cut(s) 125, 160, 418, 512, 519, 523
MseI TTAA 5 cut(s) 90, 105, 386, 405, 429
MslI CAYNNNNRTG 1 cut(s) 407
NdeII GATC 4 cut(s) 51, 222, 453, 483
NlaIII CATG 2 cut(s) 191, 482
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 164
PfeI GAWTC 2 cut(s) 120, 367
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 5 cut(s) 90, 105, 386, 405, 429
Sau3AI GATC 4 cut(s) 51, 222, 453, 483
Sau96I GGNCC 1 cut(s) 372
ScaI AGTACT 1 cut(s) 416
SduI GDGCHC 1 cut(s) 307
SetI ASST 5 cut(s) 73, 174, 354, 385, 429
SfaNI GCATC 2 cut(s) 101, 181
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 164, 242
SmoI CTYRAG 2 cut(s) 164, 242
Sse9I AATT 5 cut(s) 135, 175, 272, 430, 469
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 548
TaaI ACNGT 3 cut(s) 252, 344, 419
TaqI TCGA 3 cut(s) 54, 118, 165
TasI AATT 5 cut(s) 135, 175, 272, 430, 469
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 2 cut(s) 120, 367
Tru1I TTAA 5 cut(s) 90, 105, 386, 405, 429
Tru9I TTAA 5 cut(s) 90, 105, 386, 405, 429
TscAI CASTG 2 cut(s) 130, 314
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 423, 425
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 130, 314
XapI RAATTY 2 cut(s) 135, 175
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 1 cut(s) 482
XhoI CTCGAG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 1 cut(s) 548
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.