Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

52684405 .. 52686100

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG386400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACTGAGTATGCCACCCCTCCGACTGAGAATGCCACCCCTCCCGCTCCTACAAGGGCTGGTTTTCCCGCTTTCATTCCTACAATGACTGGTTATCCCCCCACTTTCATTCCTAAAAGGACTGGTTATCCCCGCTTGGATCCCGCTCCTATAAGAACGCCGGTCGGGGATATGGTCGGACTTGCGACAGGAGTGTTCAGTGTATTTGTTGTATTGGTCATTATCTCCTTTATCTATCGGAGACGGAAGAACAGACAACTTGTATCACTGGTTGGATACTGCATTAGTGGGGCCCAGAGATTGCTTGTTTATGAGTTCGTTTCCAACAACACCGTGGAATTTCACTTGCATGGAGAGGGGCGACCAACTATGACTTGGCCAACAAGAATGAAAATTGCTCTAGGATCTGCAAAAGGATTGGCATATCTCCATGAGGACTGTAAGTTCTCTTTGAATGCTAGCTTTTTTATTTTGGGAACTACATACAAATTTTCTGGGCTGTTATTTTCCTTGCAAGTTGCCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

9.73

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	47, 146
AciI	CCGC	4 cut(s)	45, 69, 133, 144
AclWI	GGATC	3 cut(s)	134, 147, 412
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	338, 488
AgsI	TTSAA	1 cut(s)	454
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	134, 147, 412
AoxI	GGCC	2 cut(s)	291, 377
ApaI	GGGCCC	1 cut(s)	295
ApoI	RAATTY	2 cut(s)	338, 488
AspS9I	GGNCC	2 cut(s)	291, 292
AsuNHI	GCTAGC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	401, 459
BfuI	GTATCC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	291, 292
BmiI	GGNNCC	3 cut(s)	141, 292, 293
BmtI	GCTAGC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	94, 127, 273
BseDI	CCNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	3 cut(s)	94, 127, 273
BseSI	GKGCMC	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	293, 379
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	37, 460
BsnI	GGCC	2 cut(s)	293, 379
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	139, 404
BspACI	CCGC	4 cut(s)	45, 69, 133, 144
BspANI	GGCC	2 cut(s)	293, 379
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	141, 292, 293
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	3 cut(s)	134, 147, 412
BsrBI	CCGCTC	2 cut(s)	47, 146
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	94, 127, 273
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	139, 404
Bst4CI	ACNGT	2 cut(s)	334, 440
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	6, 27
BstDSI	CCRYGG	1 cut(s)	333
BstKTI	GATC	2 cut(s)	142, 407
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	139, 404
BstMCI	CGRYCG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	139, 404
BstYI	RGATCY	2 cut(s)	139, 404
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	293, 379
BtgI	CCRYGG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	205, 266
Cac8I	GCNNGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	291, 292
CviAII	CATG	2 cut(s)	350, 431
CviJI	RGCY	5 cut(s)	59, 293, 379, 462, 499
CviKI_1	RGCY	5 cut(s)	59, 293, 379, 462, 499
DdeI	CTNAG	2 cut(s)	6, 27
DpnI	GATC	2 cut(s)	141, 406
DpnII	GATC	2 cut(s)	139, 404
EaeI	YGGCCR	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	2 cut(s)	353, 434
FaiI	YATR	9 cut(s)	12, 152, 173, 312, 351, 371, 424, 432, 484
FatI	CATG	2 cut(s)	349, 430
FauI	CCCGC	4 cut(s)	52, 76, 140, 151
FriOI	GRGCYC	1 cut(s)	295
FspBI	CTAG	2 cut(s)	401, 459
HaeIII	GGCC	2 cut(s)	293, 379
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	2 cut(s)	353, 434
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	24, 179, 240
Hpy188III	TCNNGA	1 cut(s)	528
HpyCH4III	ACNGT	2 cut(s)	334, 440
HpyCH4V	TGCA	4 cut(s)	282, 349, 410, 514
HpyF3I	CTNAG	2 cut(s)	6, 27
Hsp92II	CATG	2 cut(s)	353, 434
Kzo9I	GATC	2 cut(s)	139, 404
LmnI	GCTCC	2 cut(s)	52, 151
LpnPI	CCDG	8 cut(s)	45, 75, 108, 174, 174, 254, 308, 480
MaeI	CTAG	2 cut(s)	401, 459
MalI	GATC	2 cut(s)	141, 406
MbiI	CCGCTC	2 cut(s)	47, 146
MboI	GATC	2 cut(s)	139, 404
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	2 cut(s)	139, 404
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	3 cut(s)	338, 393, 488
MluNI	TGGCCA	1 cut(s)	379
MmeI	TCCRAC	4 cut(s)	47, 157, 253, 348
MnlI	CCTC	4 cut(s)	30, 51, 349, 427
Mox20I	TGGCCA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	379
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	379
MspI	CCGG	1 cut(s)	161
Mva1269I	GAATGC	2 cut(s)	37, 460
NdeII	GATC	2 cut(s)	139, 404
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	353, 434
NlaIV	GGNNCC	3 cut(s)	141, 292, 293
PctI	GAATGC	2 cut(s)	37, 460
PspN4I	GGNNCC	3 cut(s)	141, 292, 293
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	291, 292
PsuI	RGATCY	2 cut(s)	139, 404
RseI	CAYNNNNRTG	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	139, 404
Sau96I	GGNCC	2 cut(s)	291, 292
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	338, 393, 488
SsiI	CCGC	4 cut(s)	45, 69, 133, 144
SspMI	CTAG	2 cut(s)	401, 459
TaaI	ACNGT	2 cut(s)	334, 440
TasI	AATT	3 cut(s)	338, 393, 488
TscAI	CASTG	2 cut(s)	205, 273
TspDTI	ATGAA	3 cut(s)	64, 97, 404
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	2 cut(s)	205, 273
XapI	RAATTY	2 cut(s)	338, 488
XcmI	CCANNNNNNNNNTGG	2 cut(s)	331, 372
XspI	CTAG	2 cut(s)	401, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.