Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

57314395 .. 57314745

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG419100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACATGGAGAGAGCCACTAATAATTTTGATGCTTCAAAAATACTTGGATAAGGTGGGTTCGGGCTTGCTTGTTTACAGTGCTACTTTAGATGATGGACGAGAGGTGGCTGTGATGAAGGTTCTGAAGAGAGATGATCATCATGGTGGCCGCGAATTCTTAGCAGAAGCTGAGATGCTTGGCCGTCTTCACCACAGAAATTTGGTCAAATTAATTGGTATCTGCACAGAGGGCCATACTCGTTGCCTCGTTTACGAACTTGTTCCAAATGGAAGTGTTGAATCCCATTTACATGGTAAACACAAGTTCAACATGTCTCTATACTCAATACTTTTAACATTTCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.18

Weight (kDa)

7.88

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 104	2.7e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 102	1.4e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	151
AcoI	YGGCCR	2 cut(s)	148, 181
AcsI	RAATTY	2 cut(s)	155, 199
AcuI	CTGAAG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	38, 281, 310
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	148, 181, 232
ApoI	RAATTY	2 cut(s)	155, 199
AseI	ATTAAT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	232
BmsI	GCATC	2 cut(s)	21, 165
BpiI	GAAGAC	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	150, 183, 234
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	150, 183, 234
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	150, 183, 234
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	153
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	160, 171
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	316
BstUI	CGCG	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	150, 183, 234
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	4 cut(s)	6, 143, 293, 313
CviJI	RGCY	7 cut(s)	16, 66, 110, 150, 170, 183, 234
CviKI_1	RGCY	7 cut(s)	16, 66, 110, 150, 170, 183, 234
DdeI	CTNAG	2 cut(s)	160, 171
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	148, 181
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	155
FaeI	CATG	4 cut(s)	9, 146, 296, 316
FaiI	YATR	6 cut(s)	7, 144, 237, 294, 314, 322
FatI	CATG	4 cut(s)	5, 142, 292, 312
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	150, 183, 234
Hin1II	CATG	4 cut(s)	9, 146, 296, 316
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	76, 253, 299
Hpy188I	TCNGA	1 cut(s)	126
Hpy8I	GTNNAC	3 cut(s)	76, 253, 299
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	160, 171
Hsp92II	CATG	4 cut(s)	9, 146, 296, 316
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LweI	GCATC	2 cut(s)	21, 165
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	139, 179
MluCI	AATT	5 cut(s)	24, 155, 199, 209, 213
MnlI	CCTC	3 cut(s)	97, 223, 257
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	212, 335
MslI	CAYNNNNRTG	2 cut(s)	144, 291
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	9, 146, 296, 316
NspI	RCATGY	1 cut(s)	316
PciI	ACATGT	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	144, 291
SaqAI	TTAA	2 cut(s)	212, 335
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	4 cut(s)	57, 108, 123, 172
SfaNI	GCATC	2 cut(s)	21, 165
SmiMI	CAYNNNNRTG	2 cut(s)	144, 291
Sse9I	AATT	5 cut(s)	24, 155, 199, 209, 213
SsiI	CCGC	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	5 cut(s)	24, 155, 199, 209, 213
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	212, 335
Tru9I	TTAA	2 cut(s)	212, 335
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	2 cut(s)	155, 199
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.