Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57338797 .. 57342918

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGATTTGCGCAGTGGTATCAATATGGCAGTTGATGCTATTGTTACTGATCTGAAAAGCAAAGCATTGATGATAAGCACACCAGAAGAGATTACACAGGTTGCCACTATTTCTGCCAATGGCGAACGAGAGATTGGAGAGTTGATAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACAGTTGCTGATGGGAATACATTAGATAATGAATTGGAAGTGGTTGAAGGAATGAAGCTTGGCAGAGGTTATATTTCTCCCTATTTTATCACTAACCAAAAGACTCAGACATGTGAATTGGAATACCCACTAATCCTCATTCATGAAAAAAGAATTTCAAACATGACTGCACTCGTGAGAATACTAGAGCTGGCCGTAAATAAAAATAGACCACTTCTTGTTGTAGCCGAGGATGTTGAAAGTGATCCACTTTCCATGCTTATACTCAACAAGCACCATGCTGGGGTTAAGGTTTGTGCCATCAAAGCTCCTGGTTTTGGAGAAAACAGGAAGGCCAATTTAGAAGATCTTGCCGTTCTCACTGGCGGAGAGGTTATCAGTGAAGACCGTGGTTTAACCCTTGAGAAAGTCCAACTTGAAACACTTGGTACTGCAAAAAAGGTGACTGTATCTGTTGATGACACAATCATTCTAAATGGAGGTGGTGATAAGAAGCTGATTGAAGAAAGATGTGAGGAGTTGAGAACGACAATGGAGAAGAGTACTGCTGTGTTTGACAAGGAGAAAGCACAGGAGCGGCTGTCAAAACTATCTGGTGGAGTTGCCGTTTTCAAGGTTGGAGGGGCTAGTGAGGCAGAGGTTGGGGAGAGGAAAGATCGGGTAACAGATGCTTTGAATGCTACTAGAGCAGCGGTGGAAGAGGGTATCTTGCCAGGTGGTGGTGTTGCTCTCCTGTATGCTACAAAAGCATTGAAGAACATTCTAACGCAAAATGAAGACCAAAGAAGAGGAGTAGAAATAATCCAGAATGCTCTTAAGGCACCTACATTCACTATAGTTCAAAATGCTGGTTTTGATGGTGCTCTGGTTCTTGGTAAATTGCTGGAACAAGATGATCACAGAATGGGTTATGATGCAGCCAAAGGTGAATATGTTGACATGGTCGAGGCTGGAATCATTGATCCACTGAAAGTTGTTAGAACATCCTTGGTAGACGCAGCCAGCGTGTCGTTACTATTGACAACAACTGAGGCAGCTATAGTGGACAGTCCAACAGAGAAAAAGCCTCCCAGCCGGATGCCAAATATGGAAGATTATGGGGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0031090 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046907 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

431

Amino Acids

46.51

Weight (kDa)

4.97

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	3 - 409	1.5e-39	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccBSI	CCGCTC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	1179
AciI	CCGC	3 cut(s)	552, 763, 878
AclWI	GGATC	2 cut(s)	425, 1142
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	2 cut(s)	616, 730
AfiI	CCNNNNNNNGG	3 cut(s)	469, 503, 905
AflII	CTTAAG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	9 cut(s)	233, 345, 425, 605, 689, 799, 862, 940, 1028
AjnI	CCWGG	2 cut(s)	496, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	5 cut(s)	244, 376, 494, 682, 1223
AluI	AGCT	5 cut(s)	244, 376, 494, 682, 1223
Alw21I	GWGCWC	1 cut(s)	1051
AlwI	GGATC	2 cut(s)	425, 1142
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	378, 519
ApeKI	GCWGC	4 cut(s)	875, 1103, 1184, 1220
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	12
AsuHPI	GGTGA	3 cut(s)	640, 683, 1124
BanI	GGYRCC	1 cut(s)	1006
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	576, 969
Bbv12I	GWGCWC	1 cut(s)	1051
BbvI	GCAGC	4 cut(s)	887, 1115, 1196, 1232
BccI	CCATC	3 cut(s)	191, 494, 1037
BceAI	ACGGC	3 cut(s)	365, 524, 776
BciT130I	CCWGG	2 cut(s)	498, 900
BclI	TGATCA	1 cut(s)	1081
BfaI	CTAG	3 cut(s)	371, 813, 870
BfmI	CTRYAG	2 cut(s)	1020, 1224
BfrI	CTTAAG	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	5 cut(s)	764, 876, 1104, 1185, 1221
BlsI	GCNGC	5 cut(s)	765, 877, 1105, 1186, 1222
BmcAI	AGTACT	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	498, 900
BmiI	GGNNCC	1 cut(s)	1008
BmrFI	CCNGG	2 cut(s)	498, 900
BmsI	GCATC	4 cut(s)	25, 844, 1090, 1254
BpiI	GAAGAC	2 cut(s)	576, 969
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	414, 574, 1173
BsaXI	ACNNNNNCTCC	4 cut(s)	752, 777, 782, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 503, 905
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	498, 900
BseDI	CCNNGG	3 cut(s)	414, 574, 1173
BseGI	GGATG	3 cut(s)	424, 1169, 1269
BseLI	CCNNNNNNNGG	3 cut(s)	469, 503, 905
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	305, 1206
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	716, 990
BseXI	GCAGC	4 cut(s)	887, 1115, 1196, 1232
BseYI	CCCAGC	2 cut(s)	467, 1256
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	380, 521
BshNI	GGYRCC	1 cut(s)	1006
BsiHKAI	GWGCWC	1 cut(s)	1051
BsiSI	CCGG	1 cut(s)	1261
BslI	CCNNNNNNNGG	3 cut(s)	469, 503, 905
BsmI	GAATGC	2 cut(s)	868, 1000
BsnI	GGCC	2 cut(s)	380, 521
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
BspACI	CCGC	3 cut(s)	552, 763, 878
BspANI	GGCC	2 cut(s)	380, 521
BspCNI	CTCAG	2 cut(s)	304, 1207
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	1008
BspPI	GGATC	2 cut(s)	425, 1142
BspT107I	GGYRCC	1 cut(s)	1006
BspTI	CTTAAG	1 cut(s)	1001
BsrBI	CCGCTC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	414, 574, 1173
BssMI	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	1173
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	498, 900
Bst4CI	ACNGT	4 cut(s)	190, 575, 634, 1235
Bst6I	CTCTTC	4 cut(s)	81, 719, 879, 967
BstAFI	CTTAAG	1 cut(s)	1001
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	378, 1189
BstDEI	CTNAG	2 cut(s)	291, 1215
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	424, 1169, 1269
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	6 cut(s)	52, 433, 535, 844, 1084, 1150
BstMBI	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 491, 818, 863, 872, 932, 1004
BstNI	CCWGG	2 cut(s)	498, 900
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	496, 898
BstSFI	CTRYAG	2 cut(s)	1020, 1224
BstV1I	GCAGC	4 cut(s)	887, 1115, 1196, 1232
BstV2I	GAAGAC	2 cut(s)	576, 969
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	380, 521
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	424, 1169, 1269
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	4 cut(s)	19, 546, 571, 1151
Cac8I	GCNNGC	2 cut(s)	378, 1189
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	12
CseI	GACGC	1 cut(s)	1190
Csp6I	GTAC	2 cut(s)	615, 729
CviAII	CATG	6 cut(s)	297, 329, 349, 442, 464, 1126
CviQI	GTAC	2 cut(s)	615, 729
DdeI	CTNAG	2 cut(s)	291, 1215
DpnI	GATC	6 cut(s)	51, 432, 534, 843, 1083, 1149
DpnII	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	4 cut(s)	81, 719, 879, 967
EarI	CTCTTC	4 cut(s)	81, 719, 879, 967
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	1173
EcoRII	CCWGG	2 cut(s)	496, 898
EcoT14I	CCWWGG	1 cut(s)	1173
ErhI	CCWWGG	1 cut(s)	1173
FaeI	CATG	6 cut(s)	300, 332, 352, 445, 467, 1129
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	6 cut(s)	296, 328, 348, 441, 463, 1125
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	5 cut(s)	764, 876, 1104, 1185, 1221
FokI	GGATG	3 cut(s)	431, 1156, 1276
Fsp4HI	GCNGC	5 cut(s)	764, 876, 1104, 1185, 1221
FspBI	CTAG	3 cut(s)	371, 813, 870
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	5 cut(s)	764, 876, 1104, 1185, 1221
GsaI	CCCAGC	2 cut(s)	471, 1260
HaeIII	GGCC	2 cut(s)	380, 521
HapII	CCGG	1 cut(s)	1261
HgaI	GACGC	1 cut(s)	1190
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	6 cut(s)	300, 332, 352, 445, 467, 1129
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	1123
HindII	GTYRAC	1 cut(s)	1123
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	3 cut(s)	180, 289, 1140
HpaII	CCGG	1 cut(s)	1261
HphI	GGTGA	3 cut(s)	640, 683, 1124
Hpy166II	GTNNAC	3 cut(s)	1123, 1180, 1231
Hpy188I	TCNGA	2 cut(s)	54, 294
Hpy188III	TCNNGA	3 cut(s)	329, 361, 991
Hpy8I	GTNNAC	3 cut(s)	1123, 1180, 1231
HpyAV	CCTTC	3 cut(s)	170, 227, 511
HpyCH4III	ACNGT	4 cut(s)	190, 575, 634, 1235
HpyCH4V	TGCA	3 cut(s)	356, 620, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 491, 818, 863, 872, 932, 1004
HpyF3I	CTNAG	2 cut(s)	291, 1215
Hsp92II	CATG	6 cut(s)	300, 332, 352, 445, 467, 1129
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
LmnI	GCTCC	2 cut(s)	499, 760
Lsp1109I	GCAGC	4 cut(s)	887, 1115, 1196, 1232
LweI	GCATC	4 cut(s)	25, 844, 1090, 1254
MaeI	CTAG	3 cut(s)	371, 813, 870
MaeIII	GTNAC	4 cut(s)	43, 628, 847, 1197
MalI	GATC	6 cut(s)	51, 432, 534, 843, 1083, 1149
MbiI	CCGCTC	1 cut(s)	763
MboI	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	1051
MluCI	AATT	5 cut(s)	218, 302, 339, 523, 1064
MlyI	GAGTC	2 cut(s)	189, 283
MmeI	TCCRAC	4 cut(s)	148, 622, 784, 1262
MseI	TTAA	3 cut(s)	474, 581, 1002
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	1 cut(s)	1261
MspR9I	CCNGG	2 cut(s)	498, 900
Mva1269I	GAATGC	2 cut(s)	868, 1000
MvaI	CCWGG	2 cut(s)	498, 900
MwoI	GCNNNNNNNGC	7 cut(s)	35, 491, 818, 863, 872, 932, 1004
NdeII	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
NlaIII	CATG	6 cut(s)	300, 332, 352, 445, 467, 1129
NlaIV	GGNNCC	1 cut(s)	1008
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	628
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	300
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	1188
PctI	GAATGC	2 cut(s)	868, 1000
PfeI	GAWTC	1 cut(s)	1140
PflFI	GACNNNGTC	1 cut(s)	1127
PflMI	CCANNNNNTGG	1 cut(s)	905
PkrI	GCNGC	5 cut(s)	765, 877, 1105, 1186, 1222
PleI	GAGTC	2 cut(s)	188, 283
PpsI	GAGTC	2 cut(s)	188, 283
PscI	ACATGT	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	496, 898
PspFI	CCCAGC	2 cut(s)	467, 1256
PspGI	CCWGG	2 cut(s)	496, 898
PspN4I	GGNNCC	1 cut(s)	1008
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	1127
RsaI	GTAC	2 cut(s)	616, 730
RsaNI	GTAC	2 cut(s)	615, 729
SaqAI	TTAA	3 cut(s)	474, 581, 1002
SatI	GCNGC	5 cut(s)	764, 876, 1104, 1185, 1221
Sau3AI	GATC	6 cut(s)	49, 430, 532, 841, 1081, 1147
ScaI	AGTACT	1 cut(s)	730
SchI	GAGTC	2 cut(s)	189, 283
ScrFI	CCNGG	2 cut(s)	498, 900
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	4 cut(s)	25, 844, 1090, 1254
SfcI	CTRYAG	2 cut(s)	1020, 1224
SmlI	CTYRAG	2 cut(s)	587, 1001
SmoI	CTYRAG	2 cut(s)	587, 1001
Sse9I	AATT	5 cut(s)	218, 302, 339, 523, 1064
SsiI	CCGC	3 cut(s)	552, 763, 878
SspMI	CTAG	3 cut(s)	371, 813, 870
StyD4I	CCNGG	2 cut(s)	496, 898
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	4 cut(s)	190, 575, 634, 1235
TaqI	TCGA	1 cut(s)	1131
TasI	AATT	5 cut(s)	218, 302, 339, 523, 1064
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	1 cut(s)	1140
Tru1I	TTAA	3 cut(s)	474, 581, 1002
Tru9I	TTAA	3 cut(s)	474, 581, 1002
TscAI	CASTG	4 cut(s)	19, 553, 571, 1158
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	4 cut(s)	875, 1103, 1184, 1220
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	5 cut(s)	231, 254, 317, 345, 975
TspRI	CASTG	4 cut(s)	19, 553, 571, 1158
Tth111I	GACNNNGTC	1 cut(s)	1127
Van91I	CCANNNNNTGG	1 cut(s)	905
Vha464I	CTTAAG	1 cut(s)	1001
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	1179
XspI	CTAG	3 cut(s)	371, 813, 870
ZrmI	AGTACT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.