Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64872088 .. 64872929

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG483400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGCAAGGTTGACCCGTCTTGCTATGTTACCACTTCTCCCTCAGTCAAACGGCCGGAAATTTATTGTTCATGCCGCGAGGGGTTCGAAGGAAATCCGTATCTCGGGGAAAAATCTTGTGATGATATTAATGAATGCCAAGATGGTCGCCGCCGATGCTTTGGCAACAGCAAGTGCGTGAACGAGTATGGTTCGTACCGATGGGAGAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

71

Amino Acids

8.09

Weight (kDa)

6.2

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EGF_CA	PF07645	42 - 67	7.6e-07	Calcium-binding EGF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	76, 151
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	60
AseI	ATTAAT	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	104
BccI	CCATC	2 cut(s)	137, 195
BceAI	ACGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	76, 151
BlsI	GCNGC	2 cut(s)	77, 152
BmeT110I	CYCGRG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	87
BspACI	CCGC	2 cut(s)	76, 151
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	2 cut(s)	55, 213
CviKI_1	RGCY	2 cut(s)	55, 213
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	104
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	27, 73, 189
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	76, 151
Fsp4HI	GCNGC	2 cut(s)	76, 151
GluI	GCNGC	2 cut(s)	76, 151
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	13, 181
Hpy8I	GTNNAC	2 cut(s)	13, 181
HpyAV	CCTTC	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	75
LpnPI	CCDG	1 cut(s)	69
LweI	GCATC	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	28
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	2 cut(s)	52, 73
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	87
PctI	GAATGC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	77, 152
PshBI	ATTAAT	1 cut(s)	129
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	76, 151
SetI	ASST	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	146
SfuI	TTCGAA	1 cut(s)	87
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	76, 151
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	60
TauI	GCSGC	2 cut(s)	78, 153
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	60, 147
TspGWI	ACGGA	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.