Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70618690 .. 70619311

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG530600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGGCTATATATCTCCAGTATGCCATGGGCAGAATATTTTCCAAAAAATCTGATGTCTACACTTTCGGAGTTTTGGTATTGGAGATTATTAGCAGTAAGAAGACTACCGGCTTTTATTTATCAACAGCTAGGCTTTCTAGCCTATGCATGGAAGTTGTGGAACAAAGGCAAGGGATTGCAGTTAGTAGATCATGAAGTATTGGATGATTCATATTTCTTATTAGAAGTAATGAAATACGTGCATATTGAGCTTCTTTATGTACAGAACAATGCTACGGATAGGCCTACCATGCATGACGGATACAGCGTTGATGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

107

Amino Acids

12.89

Weight (kDa)

6.26

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	130, 253
AluI	AGCT	2 cut(s)	130, 253
AoxI	GGCC	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	131, 140
BfuI	GTATCC	1 cut(s)	296
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 292
BstV2I	GAAGAC	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	5 cut(s)	27, 150, 194, 292, 296
CviJI	RGCY	7 cut(s)	7, 113, 130, 135, 143, 253, 286
CviKI_1	RGCY	7 cut(s)	7, 113, 130, 135, 143, 253, 286
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	151, 297
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	5 cut(s)	30, 153, 197, 295, 299
FatI	CATG	5 cut(s)	26, 149, 193, 291, 295
FblI	GTMKAC	1 cut(s)	59
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	2 cut(s)	131, 140
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	5 cut(s)	30, 153, 197, 295, 299
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	54, 70
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	149, 181, 244, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 292
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	30, 153, 197, 295, 299
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	2 cut(s)	31, 123
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	131, 140
MaeII	ACGT	1 cut(s)	240
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	114
Mph1103I	ATGCAT	2 cut(s)	151, 297
MroXI	GAANNNNTTC	1 cut(s)	39
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	250, 292
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	5 cut(s)	30, 153, 197, 295, 299
NsiI	ATGCAT	2 cut(s)	151, 297
PagI	TCATGA	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	241
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	190
SetI	ASST	3 cut(s)	132, 243, 255
SfaNI	GCATC	1 cut(s)	304
SseBI	AGGCCT	1 cut(s)	286
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	131, 140
StuI	AGGCCT	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	201, 210, 248
TspGWI	ACGGA	2 cut(s)	293, 315
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	131, 140
Zsp2I	ATGCAT	2 cut(s)	151, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.