Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

71219762 .. 71222297

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG535500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAATTAGTACTTCCTCTCTGCCCAATTTTAGAGATGAAACCATTTGGGATTTTGTCGGTGTTTCTCTCACTAATAGTTCTCCCTATCCCATCTCTAAGTTCGACCAACACAACAACATGCCCCATAGATTTTAGCTATGTTCTTACTGTCCCCTTCAATTCCTCATCGTGCAAAAACTTCGAATTCCCTACCAAAACCCCCGAATTGGACGTCATTAAGAACTCGTGTTGCCGTACCCTTTTATCTGTCCTTGGGATAGGCCTTGCTCAACACCTCAAAGACACTTCTCTTTTCCTACTCCCCAACATAGCCACATCAACTTCTTGCCTCCAAGACTACCAGTCCAAGCTCACCTCTATCTCCCTCCCTACCTATGTTGTTGATTCTTGCTTTGAGCCTTCACAGTTTATCACCAGCCCCAAAATCTGTGCAAGTATTGAGTCTTCCCAAGATTGGGTAGACAAGCTTAACCATAGCACTGCACTTGACTTTGCATGCAAGCCAGACCTCACCGATCACTCATCCTGCGATGCTTGCGTAGCGGCTGGCTTCAAAATTCAGCAACAATTAATTACCGTTGATGGTAACACTTCTCACTCTAGAGATTGTTGGATCTTTACAGTTCTTTATGCTGCTGGTATGATCAATGAGCTTGGACCTGAAAGTAGTGGCTCTTTATCGTGTATCTTTGGTTTATTATTGGATTCTCATGTCGATTCGAATAGAAGGAGCATTACCACTCTTGCTTGGAAATTATGGAAAGAAGGTAGAGGAATGAAGGTGATTGATGCCTGTGTGAGAAAGGAATGCCCGCCTCATGAAGCTTTAAAGTGTATTCATGTGGCTTTTTTGTGTGTTCAAGAAGATCCAGCTGATCGACCAACAATGACAACTGTAATTCACATGTTGGGCCATGAGACTACATCACTTCCACCCTCCAAAGAACCTGCGTTTTTGGCACTTAGTAATTCCAGTGTTGTGGGTTCATCTCCATCATTTAGCACTTTTTCCAACAATGCACTCACCATTAGTATACCAGAAGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

38.09

Weight (kDa)

5.45

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	36 - 204	3.1e-40	SPARK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	958
AccI	GTMKAC	2 cut(s)	462, 1036
AciI	CCGC	2 cut(s)	545, 815
AclWI	GGATC	2 cut(s)	623, 863
AcsI	RAATTY	2 cut(s)	185, 558
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	12, 238
AfiI	CCNNNNNNNGG	3 cut(s)	208, 456, 457
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	3 cut(s)	160, 556, 863
AhdI	GACNNNNNGTC	1 cut(s)	343
AluBI	AGCT	6 cut(s)	138, 352, 469, 655, 827, 875
AluI	AGCT	6 cut(s)	138, 352, 469, 655, 827, 875
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	2 cut(s)	623, 863
AoxI	GGCC	2 cut(s)	262, 913
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	185, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AseI	ATTAAT	1 cut(s)	572
AspS9I	GGNCC	2 cut(s)	659, 913
AsuHPI	GGTGA	5 cut(s)	346, 406, 505, 796, 1018
AsuII	TTCGAA	2 cut(s)	183, 722
AvaII	GGWCC	1 cut(s)	659
BarI	GAAGNNNNNNTAC	4 cut(s)	430, 462, 721, 753
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	3 cut(s)	100, 578, 1003
BceAI	ACGGC	1 cut(s)	219
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BclI	TGATCA	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	2 cut(s)	546, 636
BlsI	GCNGC	2 cut(s)	547, 637
BmcAI	AGTACT	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	659
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	659, 913
BmsI	GCATC	2 cut(s)	523, 781
BpiI	GAAGAC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	183, 722
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 456, 457
Bse1I	ACTGG	2 cut(s)	343, 975
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	3 cut(s)	208, 456, 457
BseNI	ACTGG	2 cut(s)	343, 975
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	2 cut(s)	264, 915
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	208, 456, 457
BsmAI	GTCTC	1 cut(s)	914
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	2 cut(s)	264, 915
Bsp119I	TTCGAA	2 cut(s)	183, 722
Bsp143I	GATC	5 cut(s)	517, 615, 645, 868, 877
BspACI	CCGC	2 cut(s)	545, 815
BspANI	GGCC	2 cut(s)	264, 915
BspHI	TCATGA	1 cut(s)	820
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	2 cut(s)	623, 863
BspT104I	TTCGAA	2 cut(s)	183, 722
BsrI	ACTGG	2 cut(s)	343, 975
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	5 cut(s)	517, 615, 645, 868, 877
BssNAI	GTATAC	1 cut(s)	1037
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	253
Bst1107I	GTATAC	1 cut(s)	1037
Bst2BI	CACGAG	1 cut(s)	226
Bst4CI	ACNGT	5 cut(s)	151, 408, 580, 625, 898
BstACI	GRCGYC	1 cut(s)	213
BstBI	TTCGAA	2 cut(s)	183, 722
BstC8I	GCNNGC	5 cut(s)	499, 503, 538, 550, 815
BstDEI	CTNAG	2 cut(s)	98, 965
BstF5I	GGATG	1 cut(s)	524
BstKTI	GATC	5 cut(s)	520, 618, 648, 871, 880
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	5 cut(s)	517, 615, 645, 868, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	537, 542, 959
BstNSI	RCATGY	3 cut(s)	123, 501, 910
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	615, 868
BstXI	CCANNNNNNTGG	1 cut(s)	982
BstYI	RGATCY	2 cut(s)	615, 868
BstZ17I	GTATAC	1 cut(s)	1037
BsuRI	GGCC	2 cut(s)	264, 915
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	480, 982
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	5 cut(s)	499, 503, 538, 550, 815
CciI	TCATGA	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	659, 913
Csp6I	GTAC	2 cut(s)	11, 237
CviAII	CATG	7 cut(s)	120, 498, 713, 821, 842, 907, 917
CviQI	GTAC	2 cut(s)	11, 237
DdeI	CTNAG	2 cut(s)	98, 965
DpnI	GATC	5 cut(s)	519, 617, 647, 870, 879
DpnII	GATC	5 cut(s)	517, 615, 645, 868, 877
DraI	TTTAAA	1 cut(s)	831
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	253
Eco147I	AGGCCT	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	7 cut(s)	123, 501, 716, 824, 845, 910, 920
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	7 cut(s)	119, 497, 712, 820, 841, 906, 916
FauI	CCCGC	1 cut(s)	822
FbaI	TGATCA	1 cut(s)	645
FblI	GTMKAC	2 cut(s)	462, 1036
Fnu4HI	GCNGC	2 cut(s)	546, 636
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	546, 636
FspBI	CTAG	1 cut(s)	603
GluI	GCNGC	2 cut(s)	546, 636
HaeIII	GGCC	2 cut(s)	264, 915
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	7 cut(s)	123, 501, 716, 824, 845, 910, 920
HindIII	AAGCTT	2 cut(s)	467, 825
HinfI	GANTC	4 cut(s)	386, 443, 707, 719
HphI	GGTGA	5 cut(s)	346, 406, 505, 796, 1018
Hpy166II	GTNNAC	2 cut(s)	463, 1037
Hpy188III	TCNNGA	3 cut(s)	603, 821, 863
Hpy8I	GTNNAC	2 cut(s)	463, 1037
HpyAV	CCTTC	6 cut(s)	166, 411, 723, 761, 775, 1037
HpyCH4III	ACNGT	5 cut(s)	151, 408, 580, 625, 898
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	6 cut(s)	174, 434, 485, 497, 501, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	537, 542, 959
HpyF3I	CTNAG	2 cut(s)	98, 965
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	7 cut(s)	123, 501, 716, 824, 845, 910, 920
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	5 cut(s)	517, 615, 645, 868, 877
LmnI	GCTCC	1 cut(s)	732
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	2 cut(s)	523, 781
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	5 cut(s)	519, 617, 647, 870, 879
MboI	GATC	5 cut(s)	517, 615, 645, 868, 877
MboII	GAAGA	2 cut(s)	438, 878
MflI	RGATCY	2 cut(s)	615, 868
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	593, 1038
MseI	TTAA	4 cut(s)	219, 471, 572, 830
MspA1I	CMGCKG	1 cut(s)	875
Mva1269I	GAATGC	1 cut(s)	815
MwoI	GCNNNNNNNGC	3 cut(s)	537, 542, 959
NdeII	GATC	5 cut(s)	517, 615, 645, 868, 877
NlaIII	CATG	7 cut(s)	123, 501, 716, 824, 845, 910, 920
NspI	RCATGY	3 cut(s)	123, 501, 910
NspV	TTCGAA	2 cut(s)	183, 722
PaeI	GCATGC	1 cut(s)	501
PagI	TCATGA	1 cut(s)	820
PceI	AGGCCT	1 cut(s)	264
PciI	ACATGT	1 cut(s)	906
PctI	GAATGC	1 cut(s)	815
PfeI	GAWTC	3 cut(s)	386, 707, 719
PkrI	GCNGC	2 cut(s)	547, 637
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PscI	ACATGT	1 cut(s)	906
PshBI	ATTAAT	1 cut(s)	572
PspPI	GGNCC	2 cut(s)	659, 913
PsuI	RGATCY	2 cut(s)	615, 868
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	12, 238
RsaNI	GTAC	2 cut(s)	11, 237
SaqAI	TTAA	4 cut(s)	219, 471, 572, 830
SatI	GCNGC	2 cut(s)	546, 636
Sau3AI	GATC	5 cut(s)	517, 615, 645, 868, 877
Sau96I	GGNCC	2 cut(s)	659, 913
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	1 cut(s)	452
SfaNI	GCATC	2 cut(s)	523, 781
SfuI	TTCGAA	2 cut(s)	183, 722
SinI	GGWCC	1 cut(s)	659
SphI	GCATGC	1 cut(s)	501
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	2 cut(s)	545, 815
SspMI	CTAG	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	5 cut(s)	151, 408, 580, 625, 898
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	6 cut(s)	104, 183, 717, 722, 880, 1048
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	3 cut(s)	386, 707, 719
Tru1I	TTAA	4 cut(s)	219, 471, 572, 830
Tru9I	TTAA	4 cut(s)	219, 471, 572, 830
TscAI	CASTG	2 cut(s)	487, 982
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	5 cut(s)	53, 794, 830, 837, 978
TspRI	CASTG	2 cut(s)	487, 982
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	1 cut(s)	572
XapI	RAATTY	2 cut(s)	185, 558
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	3 cut(s)	123, 501, 910
XmiI	GTMKAC	2 cut(s)	462, 1036
XspI	CTAG	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.