Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

78339917 .. 78343451

Gene Structure 3535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG607200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGAGAAGAACGACACCGGCGGCGGCGGTGCGTATGTGAGGGCGGACCAGATAGATCTGAAGAGCTTGGACGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAGCAAGAAGAAGCGGAAGCGGAAGCGGAAGCAGCAGCAGCTAGGGTGGTGGGGCCCACCAGGAGGCAAGAGTGGGAGATTGATCCTTCCAAGCTCATAGTCAAGGGTGCTATTGCCAGAGGAACCTTCGGCACCGTCCACCGTGGCATTTACGACGGCATAGACGTCGCCGTTAAACTTCTAGATTGGGGAGAAGAGGGCCATAGAACTGACGCTGAAATAGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTGCTGTGTGGCATAAGCTTGACCATCCTAATGTAACCAAGTTTATAGGGGCGACAATGGGAACATCAGAGCTGAACATACAAACAGATAATGGCCAGGTTGGCATGCCAAGTAATGTTTGTTGCGTTGTTGTCGAGTATTGTCCTGGTGGTGCACTGAAATCTTACCTCATAAAGAACCGCAGAAAGAAGCTGGCTTTCAAAGTAGTTGTCCAATTGGCACTAGATCTTGCACGAGGGAAATGTGATGTGTACAGTTTTGGCATATGCTTGTGGGAAATATACTGCTGTGACATGCCGTATCCTGATCTTAGTTTCTCAGAGGTGACATCAGCTGTTGTCCGTCAGAATCTGAGGCCCGAGATACCTCGTTGTTGCCCAAGTTCACTTGCAAATGTTATGAAGCGGTGTTGGGATGCTAACCCTGATAAGCGGCCTGAGATGGATGAGGTGGTGGCCATGTTGGAGGCTGTCGACACAACTAAAGGCGGAGGTATGCTCCCTCATGATCATCCTCAGGGTTGTCTCTGCTTCCGTAGGTATCGAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

315

Amino Acids

35.07

Weight (kDa)

6.2

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 193	1.7e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 211	1.4e-12	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	212 - 286	5.1e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	867
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	487, 849
AcuI	CTGAAG	2 cut(s)	68, 83
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	595
AjnI	CCWGG	3 cut(s)	200, 489, 538
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	126, 923
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	6 cut(s)	194, 340, 487, 749, 827, 849
ApaI	GGGCCC	1 cut(s)	198
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	5 cut(s)	79, 173, 176, 179, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
AspS9I	GGNCC	6 cut(s)	49, 194, 195, 340, 750, 941
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	49, 941
AxyI	CCTNAGG	1 cut(s)	909
BaeGI	GKGCMC	2 cut(s)	198, 550
BalI	TGGCCA	2 cut(s)	489, 851
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BccI	CCATC	2 cut(s)	426, 829
BceAI	ACGGC	3 cut(s)	296, 313, 676
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	3 cut(s)	202, 491, 540
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	1 cut(s)	901
BcoDI	GTCTC	2 cut(s)	126, 923
BfaI	CTAG	3 cut(s)	183, 323, 617
BfuI	GTATCC	1 cut(s)	705
BglI	GCCNNNNNGGC	1 cut(s)	495
BglII	AGATCT	2 cut(s)	58, 619
BisI	GCNGC	8 cut(s)	25, 28, 80, 174, 177, 180, 378, 827
BlsI	GCNGC	8 cut(s)	26, 29, 81, 175, 178, 181, 379, 828
Bme1390I	CCNGG	3 cut(s)	202, 491, 540
Bme18I	GGWCC	2 cut(s)	49, 941
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	6 cut(s)	49, 194, 195, 340, 750, 941
BmiI	GGNNCC	4 cut(s)	195, 196, 265, 274
BmrFI	CCNGG	3 cut(s)	202, 491, 540
BmsI	GCATC	2 cut(s)	100, 799
BplI	GAGNNNNNCTC	2 cut(s)	876, 908
BpuEI	CTTGAG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	909
BseBI	CCWGG	3 cut(s)	202, 491, 540
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	4 cut(s)	418, 814, 844, 904
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	5 cut(s)	86, 726, 737, 822, 923
BseSI	GKGCMC	2 cut(s)	198, 550
BseXI	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BshFI	GGCC	6 cut(s)	196, 342, 489, 751, 829, 851
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	126, 923
BsnI	GGCC	6 cut(s)	196, 342, 489, 751, 829, 851
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	752
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	198, 550
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	5 cut(s)	58, 223, 619, 700, 901
BspANI	GGCC	6 cut(s)	196, 342, 489, 751, 829, 851
BspCNI	CTCAG	5 cut(s)	87, 725, 738, 823, 922
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	4 cut(s)	195, 196, 265, 274
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	645
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	5 cut(s)	58, 223, 619, 700, 901
BssNI	GRCGYC	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	202, 491, 540
Bst4CI	ACNGT	3 cut(s)	277, 284, 650
Bst6I	CTCTTC	2 cut(s)	59, 330
BstACI	GRCGYC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	645
BstC8I	GCNNGC	2 cut(s)	500, 588
BstDEI	CTNAG	7 cut(s)	95, 371, 704, 712, 746, 831, 909
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	4 cut(s)	418, 814, 844, 904
BstKTI	GATC	5 cut(s)	61, 226, 622, 703, 904
BstMAI	GTCTC	2 cut(s)	126, 923
BstMBI	GATC	5 cut(s)	58, 223, 619, 700, 901
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 173, 179, 362, 495
BstNI	CCWGG	3 cut(s)	202, 491, 540
BstNSI	RCATGY	2 cut(s)	502, 691
BstSCI	CCNGG	3 cut(s)	200, 489, 538
BstSLI	GKGCMC	2 cut(s)	198, 550
BstV1I	GCAGC	5 cut(s)	91, 185, 188, 191, 389
BstX2I	RGATCY	2 cut(s)	58, 619
BstYI	RGATCY	2 cut(s)	58, 619
Bsu36I	CCTNAGG	1 cut(s)	909
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	6 cut(s)	196, 342, 489, 751, 829, 851
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	418, 814, 844, 904
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	500, 588
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	1 cut(s)	898
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	6 cut(s)	49, 194, 195, 340, 750, 941
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	5 cut(s)	105, 499, 688, 853, 899
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	7 cut(s)	95, 371, 704, 712, 746, 831, 909
DpnI	GATC	5 cut(s)	60, 225, 621, 702, 903
DpnII	GATC	5 cut(s)	58, 223, 619, 700, 901
EaeI	YGGCCR	2 cut(s)	487, 849
Eam1104I	CTCTTC	2 cut(s)	59, 330
EarI	CTCTTC	2 cut(s)	59, 330
EciI	GGCGGA	2 cut(s)	62, 897
Eco24I	GRGCYC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	49, 941
Eco57I	CTGAAG	2 cut(s)	68, 83
Eco81I	CCTNAGG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	752
EcoO109I	RGGNCCY	2 cut(s)	194, 941
EcoRII	CCWGG	3 cut(s)	200, 489, 538
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	5 cut(s)	108, 502, 691, 856, 902
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FatI	CATG	5 cut(s)	104, 498, 687, 852, 898
FauNDI	CATATG	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	901
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	8 cut(s)	25, 28, 80, 174, 177, 180, 378, 827
FokI	GGATG	4 cut(s)	405, 821, 851, 891
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	8 cut(s)	25, 28, 80, 174, 177, 180, 378, 827
FspBI	CTAG	3 cut(s)	183, 323, 617
GluI	GCNGC	8 cut(s)	25, 28, 80, 174, 177, 180, 378, 827
HaeIII	GGCC	6 cut(s)	196, 342, 489, 751, 829, 851
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	108, 502, 691, 856, 902
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	742
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	5 cut(s)	280, 548, 646, 779, 868
Hpy188I	TCNGA	7 cut(s)	63, 87, 96, 463, 715, 741, 747
Hpy188III	TCNNGA	4 cut(s)	323, 389, 698, 899
Hpy8I	GTNNAC	5 cut(s)	280, 548, 646, 779, 868
Hpy99I	CGWCG	2 cut(s)	299, 311
HpyAV	CCTTC	2 cut(s)	237, 277
HpyCH4III	ACNGT	3 cut(s)	277, 284, 650
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	548, 626, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 173, 179, 362, 495
HpyF3I	CTNAG	7 cut(s)	95, 371, 704, 712, 746, 831, 909
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	108, 502, 691, 856, 902
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	5 cut(s)	58, 223, 619, 700, 901
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	142, 897
Lsp1109I	GCAGC	5 cut(s)	91, 185, 188, 191, 389
LweI	GCATC	2 cut(s)	100, 799
MaeI	CTAG	3 cut(s)	183, 323, 617
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	427, 683, 718
MalI	GATC	5 cut(s)	60, 225, 621, 702, 903
MboI	GATC	5 cut(s)	58, 223, 619, 700, 901
MboII	GAAGA	5 cut(s)	22, 76, 130, 161, 347
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	2 cut(s)	58, 619
MhlI	GDGCHC	2 cut(s)	198, 550
MlsI	TGGCCA	2 cut(s)	489, 851
MluCI	AATT	1 cut(s)	608
MluNI	TGGCCA	2 cut(s)	489, 851
MmeI	TCCRAC	1 cut(s)	837
Mox20I	TGGCCA	2 cut(s)	489, 851
MscI	TGGCCA	2 cut(s)	489, 851
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	2 cut(s)	489, 851
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	3 cut(s)	202, 491, 540
MunI	CAATTG	1 cut(s)	608
MvaI	CCWGG	3 cut(s)	202, 491, 540
MwoI	GCNNNNNNNGC	5 cut(s)	88, 173, 179, 362, 495
NdeI	CATATG	1 cut(s)	659
NdeII	GATC	5 cut(s)	58, 223, 619, 700, 901
NlaIII	CATG	5 cut(s)	108, 502, 691, 856, 902
NlaIV	GGNNCC	4 cut(s)	195, 196, 265, 274
NmuCI	GTSAC	2 cut(s)	683, 718
NspI	RCATGY	2 cut(s)	502, 691
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	898
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	8 cut(s)	26, 29, 81, 175, 178, 181, 379, 828
PpuMI	RGGWCCY	1 cut(s)	941
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	3 cut(s)	200, 489, 538
PspGI	CCWGG	3 cut(s)	200, 489, 538
PspN4I	GGNNCC	4 cut(s)	195, 196, 265, 274
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	6 cut(s)	49, 194, 195, 340, 750, 941
PspPPI	RGGWCCY	1 cut(s)	941
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	58, 619
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	866
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	8 cut(s)	25, 28, 80, 174, 177, 180, 378, 827
Sau3AI	GATC	5 cut(s)	58, 223, 619, 700, 901
Sau96I	GGNCC	6 cut(s)	49, 194, 195, 340, 750, 941
ScrFI	CCNGG	3 cut(s)	202, 491, 540
SduI	GDGCHC	2 cut(s)	198, 550
SfaNI	GCATC	2 cut(s)	100, 799
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	49, 941
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	1 cut(s)	608
SspMI	CTAG	3 cut(s)	183, 323, 617
StyD4I	CCNGG	3 cut(s)	200, 489, 538
TaaI	ACNGT	3 cut(s)	277, 284, 650
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	528, 867, 937
TasI	AATT	1 cut(s)	608
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	3 cut(s)	27, 30, 829
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	2 cut(s)	683, 718
TseI	GCWGC	5 cut(s)	79, 173, 176, 179, 377
Tsp45I	GTSAC	2 cut(s)	683, 718
TspDTI	ATGAA	2 cut(s)	17, 809
TspGWI	ACGGA	2 cut(s)	725, 917
TspRI	CASTG	1 cut(s)	555
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	49, 941
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	2 cut(s)	502, 691
XmiI	GTMKAC	1 cut(s)	867
XspI	CTAG	3 cut(s)	183, 323, 617
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.