Rh2DG086600

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Forward (+)
6723355 .. 6723660
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG086600.1

Sequence Viewer

Length: 306 bp
ATGACGTCAGTGGCGGTGGCGGTCAACGGCGGCGACGGAAACGGAAGCCGATGCGCCGTGAGGTGGGCGGTGGGGAATCTCATGCCCACAGCCGATCGCTTCGTATTGGTCCACGTCATGCCCAGAATCACTTCAATTCCAACTCCATGTAAAATATTTCCCATCTCTCCCTCACTGAATTCATGCTCTGCTCTCGTTGCTTTGGTGCTGTTACTGTGGTATTGTGCAGCAGGAGATCGCATCCCGGTGACGGAGCTAGACGAGGGTGTGGTGGCGACGTATGTAAAGGACATGAAGGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

101

Amino Acids

10.76

Weight (kDa)

7.66

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AciI CCGC 4 cut(s) 14, 20, 30, 68
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 63, 250
AgsI TTSAA 1 cut(s) 135
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 41, 43
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 31, 228
BlsI GCNGC 2 cut(s) 32, 229
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 41, 249
BpuMI CCSGG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 250
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 63, 250
BseXI GCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 63, 250
Bsp143I GATC 2 cut(s) 94, 235
BspACI CCGC 4 cut(s) 14, 20, 30, 68
BssMI GATC 2 cut(s) 94, 235
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 97, 238
BstMBI GATC 2 cut(s) 94, 235
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 239
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 15, 173
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 5 cut(s) 82, 118, 147, 183, 292
CviJI RGCY 3 cut(s) 48, 92, 256
CviKI_1 RGCY 3 cut(s) 48, 92, 256
DpnI GATC 2 cut(s) 96, 237
DpnII GATC 2 cut(s) 94, 235
Eco47I GGWCC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 178
FaeI CATG 5 cut(s) 85, 121, 150, 186, 295
FaiI YATR 6 cut(s) 83, 119, 148, 184, 282, 293
FatI CATG 5 cut(s) 81, 117, 146, 182, 291
Fnu4HI GCNGC 2 cut(s) 31, 228
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 31, 228
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 31, 228
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 85, 121, 150, 186, 295
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 76, 126
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 25, 112
Hpy8I GTNNAC 2 cut(s) 25, 112
Hpy99I CGWCG 2 cut(s) 38, 280
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 3 cut(s) 5, 114, 278
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 3 cut(s) 5, 114, 278
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 85, 121, 150, 186, 295
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 94, 235
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 3 cut(s) 136, 216, 258
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 2 cut(s) 41, 249
MaeI CTAG 1 cut(s) 257
MaeII ACGT 3 cut(s) 5, 114, 278
MaeIII GTNAC 2 cut(s) 210, 247
MalI GATC 2 cut(s) 96, 237
MboI GATC 2 cut(s) 94, 235
MluCI AATT 2 cut(s) 135, 178
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 3 cut(s) 54, 181, 256
MroXI GAANNNNTTC 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 94, 235
NlaIII CATG 5 cut(s) 85, 121, 150, 186, 295
NmuCI GTSAC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 76, 126
PkrI GCNGC 2 cut(s) 32, 229
Ple19I CGATCG 1 cut(s) 97
PspPI GGNCC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 245
SatI GCNGC 2 cut(s) 31, 228
Sau3AI GATC 2 cut(s) 94, 235
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 245
SetI ASST 5 cut(s) 8, 65, 117, 258, 281
SfaNI GCATC 2 cut(s) 41, 249
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 2 cut(s) 135, 178
SsiI CCGC 4 cut(s) 14, 20, 30, 68
SspI AATATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 3 cut(s) 8, 117, 281
TasI AATT 2 cut(s) 135, 178
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 76, 126
TscAI CASTG 2 cut(s) 15, 180
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 3 cut(s) 51, 57, 266
TspRI CASTG 2 cut(s) 15, 180
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.