Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7805186 .. 7806368

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACAGTCAAGAAAATCACATGTTGGTCTATAGTCCCAAGTTGCTACAAGTCTGAGTTCCAAGCTCCCAAGAACAAAGCAAAGGTGATAGCAAAGCAGAACTCATTCCAGAGGCTTTCGCTTTCGGATTTGAGCAATCCCAGCTCGACTACACTTTCAGAAGATCTCTCCATATCTCTTGCGGGTTCCAATCTTCATATTTTCACACTTGGGGAGCTGAAGGTGATCACACAGAGCTTCTCATCCAGCAACTTTCTTGGAGAGGGCGGGTTTGGGCCCGTCCACAAAGGGTTCATCGATGACAAGCTTAGACCCGGTTTGGCTGCTCAGCCTGTGGCTGTTAAGCTCTTGGACTTGGATGGAACACAGGGGCATAGAGAGTGGTTGGTGAGGTATTCAGTATCACTGCCATGGTCAACCAGAATGAAGATTGCTCTTGGAGCTGCAAAGGGTCTTGCTTTCCTACATGAAGCAGAGAAACCAGTTATATACCGAGATTTCAAAGCTTCGAACATCTTGTTAGATTCTGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.47

Weight (kDa)

9.39

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	182, 267
AcuI	CTGAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	502
AluBI	AGCT	8 cut(s)	65, 144, 217, 237, 307, 346, 443, 506
AluI	AGCT	8 cut(s)	65, 144, 217, 237, 307, 346, 443, 506
AoxI	GGCC	1 cut(s)	275
ApaI	GGGCCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	323, 443
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	275, 276
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	97, 235, 400
AsuII	TTCGAA	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	310, 430
BccI	CCATC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	30
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	2 cut(s)	324, 444
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	2 cut(s)	325, 445
Bme1390I	CCNGG	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	275, 276
BmiI	GGNNCC	2 cut(s)	187, 277
BmrFI	CCNGG	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	2 cut(s)	242, 364
BseMII	CTCAG	2 cut(s)	45, 341
BseNI	ACTGG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	310, 430
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	509
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	163, 225
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	182, 267
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	46, 340
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	187, 277
BspT104I	TTCGAA	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	163, 225
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	54, 308, 327
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	242, 364
BstKTI	GATC	2 cut(s)	166, 228
BstMBI	GATC	2 cut(s)	163, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 440
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	310, 430
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	277
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	242, 364
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	275, 276
ClaI	ATCGAT	1 cut(s)	297
CviAII	CATG	3 cut(s)	21, 411, 467
DdeI	CTNAG	3 cut(s)	54, 308, 327
DpnI	GATC	2 cut(s)	165, 227
DpnII	GATC	2 cut(s)	163, 225
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	24, 414, 470
FaiI	YATR	9 cut(s)	22, 32, 173, 198, 375, 412, 468, 488, 490
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	20, 410, 466
FauI	CCCGC	2 cut(s)	175, 260
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	324, 444
FokI	GGATG	2 cut(s)	229, 371
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	324, 444
GluI	GCNGC	2 cut(s)	324, 444
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	3 cut(s)	24, 414, 470
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	305, 504
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	97, 235, 400
Hpy166II	GTNNAC	2 cut(s)	283, 417
Hpy188I	TCNGA	3 cut(s)	55, 127, 160
Hpy188III	TCNNGA	2 cut(s)	10, 109
Hpy8I	GTNNAC	2 cut(s)	283, 417
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 440
HpyF3I	CTNAG	3 cut(s)	54, 308, 327
Hsp92II	CATG	3 cut(s)	24, 414, 470
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	163, 225
LmnI	GCTCC	3 cut(s)	70, 214, 440
LpnPI	CCDG	8 cut(s)	122, 154, 259, 328, 345, 353, 433, 495
Lsp1109I	GCAGC	2 cut(s)	310, 430
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	165, 227
MboI	GATC	2 cut(s)	163, 225
MboII	GAAGA	3 cut(s)	173, 185, 439
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	105, 256, 384
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	409
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	141, 440
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	163, 225
NlaIII	CATG	3 cut(s)	24, 414, 470
NlaIV	GGNNCC	2 cut(s)	187, 277
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	509
PciI	ACATGT	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	325, 445
PscI	ACATGT	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	187, 277
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	275, 276
PsuI	RGATCY	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	324, 444
Sau3AI	GATC	2 cut(s)	163, 225
Sau96I	GGNCC	2 cut(s)	275, 276
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	409
SsiI	CCGC	2 cut(s)	182, 267
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	3 cut(s)	146, 297, 509
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	323, 443
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	4 cut(s)	185, 283, 440, 483
TspRI	CASTG	1 cut(s)	411
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.