Rh2DG166100

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Reverse (-)
14467657 .. 14469751
2095 bp
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UTR
Exon/CDS
Intron
Rh2DG166100.1

Sequence Viewer

Length: 471 bp
ATGGTGGCATTGTTAATCTTAAAAGGTTTGACGAAACTAAAGTCTCTTAGTGTTAGATGTTGTAAATGCATCACATATTCAGATTTAAAGGCCATCTCAGGGCTTACAAACCTCAATGAATTACAGATATCTAACTGCAACATTACTGATTCTGGAATCTCTTATTTGAAAGGCTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACGTCTGCATGTTTGGAGTCTATTTCAGCTCTTGGTGCCCTGGCTTACTTAAATCTCAACATATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGCCTTACAAACTTGAAGGTTTTGAGCTTGGGATTCAACAGTATCACAGATGCATGTTTGGTGCAGCTAAAAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCGAACTGGGGTTTGTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

156

Amino Acids

16.62

Weight (kDa)

5.35

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 10 - 71 5.7e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 12 - 71 3.2e-06 Leucine rich repeat
LRR_14 PF23598 12 - 141 3.7e-07 Leucine-rich repeat region
LRR_8 PF13855 86 - 144 4e-08 Leucine rich repeat
LRR_4 PF12799 108 - 146 3.9e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 5 cut(s) 169, 196, 331, 352, 412
AjnI CCWGG 2 cut(s) 255, 414
AluBI AGCT 5 cut(s) 184, 245, 342, 382, 408
AluI AGCT 5 cut(s) 184, 245, 342, 382, 408
Alw26I GTCTC 1 cut(s) 48
AoxI GGCC 2 cut(s) 90, 316
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 257, 416
BcoDI GTCTC 1 cut(s) 48
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 257, 416
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 257, 416
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 3 cut(s) 78, 197, 355
BmuI ACTGGG 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 257, 416
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 212, 305
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 458
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 398
BshFI GGCC 2 cut(s) 92, 318
BshNI GGYRCC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 2 cut(s) 92, 318
Bsp1286I GDGCHC 1 cut(s) 256
BspANI GGCC 2 cut(s) 92, 318
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 257, 416
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 176, 447
BstDEI CTNAG 3 cut(s) 47, 97, 199
BstF5I GGATG 2 cut(s) 212, 305
BstMAI GTCTC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 257, 416
BstNSI RCATGY 2 cut(s) 228, 372
BstSCI CCNGG 2 cut(s) 255, 414
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 92, 318
BtsCI GGATG 2 cut(s) 212, 305
Cac8I GCNNGC 2 cut(s) 176, 447
Csp6I GTAC 1 cut(s) 463
CviAII CATG 2 cut(s) 225, 369
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 3 cut(s) 47, 97, 199
DraI TTTAAA 1 cut(s) 87
Eco32I GATATC 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 255, 414
EcoRV GATATC 1 cut(s) 129
EcoT22I ATGCAT 2 cut(s) 71, 370
FaeI CATG 2 cut(s) 228, 372
FaiI YATR 6 cut(s) 76, 191, 226, 278, 280, 370
FatI CATG 2 cut(s) 224, 368
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 219, 312
Fsp4HI GCNGC 1 cut(s) 380
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 92, 318
Hin1II CATG 2 cut(s) 228, 372
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 149, 156, 233, 348, 419
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 82, 292
Hpy188III TCNNGA 2 cut(s) 153, 468
HpyAV CCTTC 2 cut(s) 290, 325
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 8 cut(s) 69, 138, 178, 210, 224, 282, 368, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 47, 97, 199
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 228, 372
LpnPI CCDG 8 cut(s) 84, 138, 242, 269, 300, 401, 428, 439
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 3 cut(s) 78, 197, 355
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 214, 434
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 2 cut(s) 119, 397
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 3 cut(s) 122, 196, 433
Mph1103I ATGCAT 2 cut(s) 71, 370
MseI TTAA 5 cut(s) 14, 20, 86, 186, 266
MspR9I CCNGG 2 cut(s) 257, 416
MvaI CCWGG 2 cut(s) 257, 416
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeI CATATG 1 cut(s) 278
NlaIII CATG 2 cut(s) 228, 372
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 71, 370
NspI RCATGY 2 cut(s) 228, 372
PfeI GAWTC 4 cut(s) 149, 156, 348, 419
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 255, 414
PspGI CCWGG 2 cut(s) 255, 414
PspN4I GGNNCC 1 cut(s) 253
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 5 cut(s) 14, 20, 86, 186, 266
SatI GCNGC 1 cut(s) 380
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 257, 416
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 3 cut(s) 78, 197, 355
Sse9I AATT 2 cut(s) 119, 397
StyD4I CCNGG 2 cut(s) 255, 414
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 221
TasI AATT 2 cut(s) 119, 397
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 4 cut(s) 149, 156, 348, 419
Tru1I TTAA 5 cut(s) 14, 20, 86, 186, 266
Tru9I TTAA 5 cut(s) 14, 20, 86, 186, 266
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 132, 309
XapI RAATTY 1 cut(s) 397
XceI RCATGY 2 cut(s) 228, 372
Zsp2I ATGCAT 2 cut(s) 71, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.