Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35777135 .. 35779122

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGCTGAATGCAAATGCCTTCCAGGATTTGAGTCTATCACGCCAGGGGATCAGACTTCAGGCTGTGGGAGGAATATAGTTGCAGATATTTGCAAGTCAGAGAATGAAAACTTCACATACATCATGGAAGAACTGCCCAGCACAAGATGGCAAAATTTTGCATACATGACTTTGTCATTATCAGACAAAGAAGGGTGCAACAAGGCCTGCCTGGAGGATTGCAACTGTGAAGCCGCACTTTTCGCAGATGGAAGCTGCAGAAAGCAGAGGCTTCCTTTGACTTATGGAAGAAGAATGTTAAATATTTCAAACTCAGCTTTCATCAAAGTTGGTATTTCTAAACCTCCAGCTACAGATAATATTATCCATCCAAAGGGAAACAAGAAAGAAAGTCGAGTTGCAGTCCTTATTGTTGGAGTTTCATTTACTGCTTTTGGGTCCATTTTGTTGGTGATCTCTAGATTCATCTGGGGCATTTCCATAGGAGAGATGAAGTTAGCTAAGCCATACATGCCAAGTCAAGACTCTGTAGAAGTTGAAGGTTCTGCACTAGAAAGTGACGAAAGCGAAAATCACTTTGTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

197

Amino Acids

21.67

Weight (kDa)

5.33

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	312, 542
AjnI	CCWGG	3 cut(s)	25, 46, 213
AluBI	AGCT	5 cut(s)	8, 258, 320, 353, 503
AluI	AGCT	5 cut(s)	8, 258, 320, 353, 503
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	3 cut(s)	144, 245, 378
BciT130I	CCWGG	3 cut(s)	27, 48, 215
BfaI	CTAG	2 cut(s)	462, 554
BfmI	CTRYAG	3 cut(s)	259, 354, 531
BisI	GCNGC	2 cut(s)	237, 259
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	2 cut(s)	238, 260
Bme1390I	CCNGG	3 cut(s)	27, 48, 215
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	3 cut(s)	27, 48, 215
BpmI	CTGGAG	2 cut(s)	236, 333
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	27, 48, 215
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	52, 456
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	52, 456
Bst2UI	CCWGG	3 cut(s)	27, 48, 215
Bst4CI	ACNGT	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	316, 504
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	2 cut(s)	55, 459
BstMBI	GATC	2 cut(s)	52, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 514
BstNI	CCWGG	3 cut(s)	27, 48, 215
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	3 cut(s)	25, 46, 213
BstSFI	CTRYAG	3 cut(s)	259, 354, 531
BstV1I	GCAGC	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	441
CviAII	CATG	3 cut(s)	127, 169, 514
DdeI	CTNAG	2 cut(s)	316, 504
DpnI	GATC	2 cut(s)	54, 458
DpnII	GATC	2 cut(s)	52, 456
Eco147I	AGGCCT	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	3 cut(s)	25, 46, 213
FaeI	CATG	3 cut(s)	130, 172, 517
FaiI	YATR	9 cut(s)	80, 121, 128, 166, 170, 288, 485, 511, 515
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	3 cut(s)	126, 168, 513
Fnu4HI	GCNGC	2 cut(s)	237, 259
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	237, 259
FspBI	CTAG	2 cut(s)	462, 554
GluI	GCNGC	2 cut(s)	237, 259
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	236, 333
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	130, 172, 517
HinfI	GANTC	3 cut(s)	35, 465, 527
HphI	GGTGA	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	57, 103, 187
Hpy188III	TCNNGA	2 cut(s)	462, 524
HpyAV	CCTTC	3 cut(s)	32, 188, 536
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	9 cut(s)	15, 86, 96, 164, 201, 225, 261, 404, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 514
HpyF3I	CTNAG	2 cut(s)	316, 504
Hsp92II	CATG	3 cut(s)	130, 172, 517
Kzo9I	GATC	2 cut(s)	52, 456
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	462, 554
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	2 cut(s)	54, 458
MboI	GATC	2 cut(s)	52, 456
MboII	GAAGA	3 cut(s)	143, 303, 306
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	44, 521
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	66, 211, 264, 357
MseI	TTAA	1 cut(s)	302
MspR9I	CCNGG	3 cut(s)	27, 48, 215
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	3 cut(s)	27, 48, 215
MwoI	GCNNNNNNNGC	2 cut(s)	245, 514
NdeII	GATC	2 cut(s)	52, 456
NlaIII	CATG	3 cut(s)	130, 172, 517
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	560
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	465
PflFI	GACNNNGTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	238, 260
PleI	GAGTC	2 cut(s)	43, 521
PpsI	GAGTC	2 cut(s)	43, 521
Psp6I	CCWGG	3 cut(s)	25, 46, 213
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	3 cut(s)	25, 46, 213
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	237, 259
Sau3AI	GATC	2 cut(s)	52, 456
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	2 cut(s)	44, 521
ScrFI	CCNGG	3 cut(s)	27, 48, 215
SetI	ASST	7 cut(s)	10, 260, 322, 349, 355, 505, 547
SfcI	CTRYAG	3 cut(s)	259, 354, 531
SinI	GGWCC	1 cut(s)	441
Sse9I	AATT	1 cut(s)	157
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	237
SspI	AATATT	2 cut(s)	307, 364
SspMI	CTAG	2 cut(s)	462, 554
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	25, 46, 213
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	157
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	123, 313, 414, 457, 509
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	1 cut(s)	517
XspI	CTAG	2 cut(s)	462, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.