Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

45011187 .. 45019127

Gene Structure 7941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCAGATGGAAGTCCTAGGACTGATACTTCAACAGATGACACAGAGGATAAAAATCAGATGGTAACATCTCTTACTTTTATTCTTTCAGCACATACAGCATTAGAGTCTGTTCCACCTGTATTGCTTTCATTTTCCATTTTAATCTCTGCTGGTTCATTTGTCATACAAGTATCTAGTGTTCAAAGATACTTGATTGTTATTTTTTCCATAAAAACTTTGCACATGAGGCTATTCATTCTTATATTTGGCATTTTTTTTAAGAGAGCTGTTTATCTTTCCAACTTGGTATTTTTTTTTCCTTTGTTGGGGTCAGATTTATTTGCTGCTTTTTGCCTTTTGGTGGTGAAATTATGCTTTGCGCAGATTGAAAGGAATCAAATGACTGGTCTTCTAGCTTCTGATTCCAGTGATAGATCAAAAGAAAAACCTGGGGATCAAAAGACGCTGCGCAGGCTTGCTCAAAATCGTGAAGCTGCCAGGAAAAGCCGGTTACGAAAAAAAGCATATGTACAACAACTCGAGAGTAGCCGGTTGAAATTAACCCAGCTTGAGCAAGAACTTCAGCGTGCCCGCCAGCAGGGCATATTCATTTCAAGCTCTGGAGATCAAGCCCATTCAATGAGTGGAAATGGTGCTTTGGCATTTGATGTGGAATATGCAAGGTGGCTGGAGGAGCACAACAGGCAGATAAATGAGTTGAGGGCTGCTGTTAATTCACATGCGGGTGACACGGAACTCCGTACTGTAATTGATAATGTCATTGCTCACTATGATGACATTTTTAGACTAAAGGGCATTGCAGCAAAAGCTGATGTTTTCCACATTTTGTCAGGAATGTGGAAAACACCAGCGGAACGGTGTTTTATGTGGATTGGTGGCTTCCGCTCATCTGAGCTTTTGAAGCTTCTTGTGCGTCAATTGGAACCCCTAACGGAGCAGCAAGTGATGAATATTTACAACTTACAGCAATCATCCCAGCAGGCTGAAGATGCTTTGTCACAAGGGATGGACGCATTACAGCAGTCACTTGCTGAGACCTTGGCCAGTGGTTCACCTGGGCCATCAGGAACATCTGGGAATGTAGCAAACTATATGGGTCAAATGGCTATGGCGATGGGAAAGCTAGGCACTCTTGAGGGGTTCCTTCGCCAGGCTGATAATCTTCGCCAGCAAACTCTGCAACAAATGCATCGTATACTGACAACTCGGCAGTCAGCTCGTGCACTTCTTGCAATCAATGATTATTTCTCGCGTCTTAGAGCCCTCAGTTCTCTTTGGCTTGCCAGGCCCCGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

433

Amino Acids

48.55

Weight (kDa)

9.3

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	148 - 188	1.1e-06	bZIP transcription factor
DOG1	PF14144	230 - 305	3.5e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	363, 452
AccBSI	CCGCTC	1 cut(s)	888
AccI	GTMKAC	1 cut(s)	1198
AccII	CGCG	1 cut(s)	1255
AciI	CCGC	4 cut(s)	574, 725, 854, 886
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	1044
AcuI	CTGAAG	2 cut(s)	548, 1008
AfaI	GTAC	2 cut(s)	513, 745
AfiI	CCNNNNNNNGG	4 cut(s)	308, 343, 580, 1153
AgsI	TTSAA	7 cut(s)	33, 185, 371, 538, 597, 621, 904
AjnI	CCWGG	5 cut(s)	430, 479, 1057, 1152, 1286
Alw21I	GWGCWC	2 cut(s)	681, 1228
Alw26I	GTCTC	1 cut(s)	1031
Alw44I	GTGCAC	1 cut(s)	1224
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	2 cut(s)	521, 1293
AoxI	GGCC	3 cut(s)	1044, 1061, 1289
ApaLI	GTGCAC	1 cut(s)	1224
ApeKI	GCWGC	6 cut(s)	326, 448, 476, 707, 803, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	364, 453
AspS9I	GGNCC	2 cut(s)	1061, 1290
AsuHPI	GGTGA	3 cut(s)	358, 740, 1047
AvaI	CYCGRG	2 cut(s)	521, 1293
AvrII	CCTAGG	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	574, 1228
BalI	TGGCCA	1 cut(s)	1046
BanII	GRGCYC	1 cut(s)	1267
BauI	CACGAG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	681, 1228
BbvI	GCAGC	6 cut(s)	313, 435, 463, 694, 815, 952
BccI	CCATC	5 cut(s)	2, 55, 1003, 1072, 1111
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	5 cut(s)	432, 481, 1059, 1154, 1288
BcoDI	GTCTC	1 cut(s)	1031
BfaI	CTAG	4 cut(s)	18, 177, 395, 1127
BglI	GCCNNNNNGGC	1 cut(s)	582
BisI	GCNGC	6 cut(s)	327, 449, 477, 708, 804, 941
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	6 cut(s)	328, 450, 478, 709, 805, 942
Bme1390I	CCNGG	5 cut(s)	432, 481, 1059, 1154, 1288
BmeT110I	CYCGRG	2 cut(s)	521, 1293
BmgT120I	GGNCC	2 cut(s)	1061, 1290
BmiI	GGNNCC	3 cut(s)	927, 1145, 1292
BmrFI	CCNGG	5 cut(s)	432, 481, 1059, 1154, 1288
BmsI	GCATC	2 cut(s)	982, 1201
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	624, 692
BpuEI	CTTGAG	2 cut(s)	572, 1157
BsaBI	GATNNNNATC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	1031
BsaJI	CCNNGG	4 cut(s)	17, 431, 1041, 1058
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 343, 580, 1153
Bse118I	RCCGGY	2 cut(s)	489, 531
Bse1I	ACTGG	3 cut(s)	391, 408, 1047
Bse3DI	GCAATG	2 cut(s)	762, 798
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	5 cut(s)	432, 481, 1059, 1154, 1288
BseDI	CCNNGG	4 cut(s)	17, 431, 1041, 1058
BseGI	GGATG	2 cut(s)	974, 1014
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	4 cut(s)	308, 343, 580, 1153
BseMI	GCAATG	2 cut(s)	762, 798
BseMII	CTCAG	3 cut(s)	885, 1026, 1282
BseNI	ACTGG	3 cut(s)	391, 408, 1047
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	2 cut(s)	574, 1228
BseXI	GCAGC	6 cut(s)	313, 435, 463, 694, 815, 952
BseYI	CCCAGC	2 cut(s)	546, 978
Bsh1236I	CGCG	1 cut(s)	1255
BshFI	GGCC	3 cut(s)	1046, 1063, 1291
BsiHKAI	GWGCWC	2 cut(s)	681, 1228
BsiHKCI	CYCGRG	2 cut(s)	521, 1293
BsiSI	CCGG	2 cut(s)	490, 532
BslI	CCNNNNNNNGG	4 cut(s)	308, 343, 580, 1153
BsmAI	GTCTC	1 cut(s)	1031
BsnI	GGCC	3 cut(s)	1046, 1063, 1291
Bso31I	GGTCTC	1 cut(s)	1031
BsoBI	CYCGRG	2 cut(s)	521, 1293
Bsp1286I	GDGCHC	4 cut(s)	574, 681, 1228, 1267
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	416, 436, 607
BspACI	CCGC	4 cut(s)	574, 725, 854, 886
BspANI	GGCC	3 cut(s)	1046, 1063, 1291
BspCNI	CTCAG	3 cut(s)	886, 1027, 1281
BspFNI	CGCG	1 cut(s)	1255
BspLI	GGNNCC	3 cut(s)	927, 1145, 1292
BspPI	GGATC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	1031
BsrBI	CCGCTC	1 cut(s)	888
BsrDI	GCAATG	2 cut(s)	762, 798
BsrFI	RCCGGY	2 cut(s)	489, 531
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	391, 408, 1047
BssAI	RCCGGY	2 cut(s)	489, 531
BssECI	CCNNGG	4 cut(s)	17, 431, 1041, 1058
BssMI	GATC	3 cut(s)	416, 436, 607
BssNAI	GTATAC	1 cut(s)	1199
BssSI	CACGAG	1 cut(s)	1221
BssT1I	CCWWGG	2 cut(s)	17, 1041
Bst1107I	GTATAC	1 cut(s)	1199
Bst2BI	CACGAG	1 cut(s)	1221
Bst2UI	CCWGG	5 cut(s)	432, 481, 1059, 1154, 1288
Bst4CI	ACNGT	2 cut(s)	748, 861
BstAPI	GCANNNNNTGC	3 cut(s)	1180, 1189, 1232
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	8 cut(s)	455, 459, 570, 574, 578, 984, 1172, 1284
BstDEI	CTNAG	4 cut(s)	894, 1035, 1259, 1268
BstENI	CCTNNNNNAGG	1 cut(s)	1151
BstF5I	GGATG	2 cut(s)	974, 1014
BstFNI	CGCG	1 cut(s)	1255
BstHHI	GCGC	2 cut(s)	364, 453
BstKTI	GATC	3 cut(s)	419, 439, 610
BstMAI	GTCTC	1 cut(s)	1031
BstMBI	GATC	3 cut(s)	416, 436, 607
BstNI	CCWGG	5 cut(s)	432, 481, 1059, 1154, 1288
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	5 cut(s)	430, 479, 1057, 1152, 1286
BstSLI	GKGCMC	2 cut(s)	574, 1228
BstUI	CGCG	1 cut(s)	1255
BstV1I	GCAGC	6 cut(s)	313, 435, 463, 694, 815, 952
BstV2I	GAAGAC	1 cut(s)	383
BstZ17I	GTATAC	1 cut(s)	1199
BsuRI	GGCC	3 cut(s)	1046, 1063, 1291
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	2 cut(s)	974, 1014
BtsIMutI	CAGTG	2 cut(s)	415, 1054
Cac8I	GCNNGC	8 cut(s)	455, 459, 570, 574, 578, 984, 1172, 1284
CfoI	GCGC	2 cut(s)	364, 453
Cfr10I	RCCGGY	2 cut(s)	489, 531
Cfr13I	GGNCC	2 cut(s)	1061, 1290
CseI	GACGC	4 cut(s)	454, 905, 1022, 1244
Csp6I	GTAC	2 cut(s)	512, 744
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	2 cut(s)	226, 722
CviQI	GTAC	2 cut(s)	512, 744
DdeI	CTNAG	4 cut(s)	894, 1035, 1259, 1268
DpnI	GATC	3 cut(s)	418, 438, 609
DpnII	GATC	3 cut(s)	416, 436, 607
EaeI	YGGCCR	1 cut(s)	1044
Eco130I	CCWWGG	2 cut(s)	17, 1041
Eco24I	GRGCYC	1 cut(s)	1267
Eco31I	GGTCTC	1 cut(s)	1031
Eco57I	CTGAAG	2 cut(s)	548, 1008
Eco88I	CYCGRG	2 cut(s)	521, 1293
EcoNI	CCTNNNNNAGG	1 cut(s)	1151
EcoO109I	RGGNCCY	1 cut(s)	1290
EcoRII	CCWGG	5 cut(s)	430, 479, 1057, 1152, 1286
EcoT14I	CCWWGG	2 cut(s)	17, 1041
EcoT22I	ATGCAT	1 cut(s)	1194
EcoT38I	GRGCYC	1 cut(s)	1267
ErhI	CCWWGG	2 cut(s)	17, 1041
FaeI	CATG	2 cut(s)	229, 725
FatI	CATG	2 cut(s)	225, 721
FauI	CCCGC	2 cut(s)	581, 718
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	1198
Fnu4HI	GCNGC	6 cut(s)	327, 449, 477, 708, 804, 941
FokI	GGATG	2 cut(s)	961, 1021
FriOI	GRGCYC	1 cut(s)	1267
Fsp4HI	GCNGC	6 cut(s)	327, 449, 477, 708, 804, 941
FspBI	CTAG	4 cut(s)	18, 177, 395, 1127
FspI	TGCGCA	2 cut(s)	363, 452
GlaI	GCGC	2 cut(s)	363, 452
GluI	GCNGC	6 cut(s)	327, 449, 477, 708, 804, 941
GsaI	CCCAGC	2 cut(s)	550, 982
GsuI	CTGGAG	2 cut(s)	624, 692
HaeIII	GGCC	3 cut(s)	1046, 1063, 1291
HapII	CCGG	2 cut(s)	490, 532
HgaI	GACGC	4 cut(s)	454, 905, 1022, 1244
HhaI	GCGC	2 cut(s)	364, 453
Hin1II	CATG	2 cut(s)	229, 725
Hin6I	GCGC	2 cut(s)	362, 451
HinP1I	GCGC	2 cut(s)	362, 451
HindIII	AAGCTT	1 cut(s)	905
HinfI	GANTC	3 cut(s)	107, 376, 404
HpaII	CCGG	2 cut(s)	490, 532
HphI	GGTGA	3 cut(s)	358, 740, 1047
Hpy166II	GTNNAC	3 cut(s)	1055, 1199, 1226
Hpy188I	TCNGA	4 cut(s)	60, 316, 403, 895
Hpy188III	TCNNGA	6 cut(s)	470, 523, 603, 834, 1068, 1136
Hpy8I	GTNNAC	3 cut(s)	1055, 1199, 1226
HpyAV	CCTTC	1 cut(s)	1157
HpyCH4III	ACNGT	2 cut(s)	748, 861
HpyCH4V	TGCA	7 cut(s)	223, 662, 803, 1183, 1192, 1226, 1235
HpyF3I	CTNAG	4 cut(s)	894, 1035, 1259, 1268
Hsp92II	CATG	2 cut(s)	229, 725
HspAI	GCGC	2 cut(s)	362, 451
Kzo9I	GATC	3 cut(s)	416, 436, 607
LmnI	GCTCC	2 cut(s)	676, 937
Lsp1109I	GCAGC	6 cut(s)	313, 435, 463, 694, 815, 952
LweI	GCATC	2 cut(s)	982, 1201
MaeI	CTAG	4 cut(s)	18, 177, 395, 1127
MaeIII	GTNAC	5 cut(s)	64, 492, 728, 999, 1026
MalI	GATC	3 cut(s)	418, 438, 609
MbiI	CCGCTC	1 cut(s)	888
MboI	GATC	3 cut(s)	416, 436, 607
MboII	GAAGA	3 cut(s)	383, 1001, 1157
MfeI	CAATTG	1 cut(s)	920
MhlI	GDGCHC	4 cut(s)	574, 681, 1228, 1267
MlsI	TGGCCA	1 cut(s)	1046
MluCI	AATT	5 cut(s)	350, 539, 715, 750, 920
MluNI	TGGCCA	1 cut(s)	1046
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	6 cut(s)	40, 222, 667, 696, 1132, 1277
Mox20I	TGGCCA	1 cut(s)	1046
Mph1103I	ATGCAT	1 cut(s)	1194
MscI	TGGCCA	1 cut(s)	1046
MseI	TTAA	4 cut(s)	143, 261, 542, 714
MslI	CAYNNNNRTG	2 cut(s)	726, 774
Msp20I	TGGCCA	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	490, 532
MspR9I	CCNGG	5 cut(s)	432, 481, 1059, 1154, 1288
MunI	CAATTG	1 cut(s)	920
MvaI	CCWGG	5 cut(s)	432, 481, 1059, 1154, 1288
MvnI	CGCG	1 cut(s)	1255
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	416, 436, 607
NlaIII	CATG	2 cut(s)	229, 725
NlaIV	GGNNCC	3 cut(s)	927, 1145, 1292
NmeAIII	GCCGAG	1 cut(s)	1189
NmuCI	GTSAC	3 cut(s)	728, 999, 1026
NsbI	TGCGCA	2 cut(s)	363, 452
NsiI	ATGCAT	1 cut(s)	1194
NspI	RCATGY	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	376, 404
PkrI	GCNGC	6 cut(s)	328, 450, 478, 709, 805, 942
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	5 cut(s)	430, 479, 1057, 1152, 1286
PspFI	CCCAGC	2 cut(s)	546, 978
PspGI	CCWGG	5 cut(s)	430, 479, 1057, 1152, 1286
PspN4I	GGNNCC	3 cut(s)	927, 1145, 1292
PspPI	GGNCC	2 cut(s)	1061, 1290
PsrI	GAACNNNNNNTAC	2 cut(s)	165, 197
RsaI	GTAC	2 cut(s)	513, 745
RsaNI	GTAC	2 cut(s)	512, 744
RseI	CAYNNNNRTG	2 cut(s)	726, 774
SaqAI	TTAA	4 cut(s)	143, 261, 542, 714
SatI	GCNGC	6 cut(s)	327, 449, 477, 708, 804, 941
Sau3AI	GATC	3 cut(s)	416, 436, 607
Sau96I	GGNCC	2 cut(s)	1061, 1290
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	432, 481, 1059, 1154, 1288
SduI	GDGCHC	4 cut(s)	574, 681, 1228, 1267
SfaNI	GCATC	2 cut(s)	982, 1201
Sfr274I	CTCGAG	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	726, 774
SmlI	CTYRAG	3 cut(s)	521, 551, 1136
SmoI	CTYRAG	3 cut(s)	521, 551, 1136
Sse9I	AATT	5 cut(s)	350, 539, 715, 750, 920
SsiI	CCGC	4 cut(s)	574, 725, 854, 886
SspI	AATATT	1 cut(s)	955
SspMI	CTAG	4 cut(s)	18, 177, 395, 1127
StyD4I	CCNGG	5 cut(s)	430, 479, 1057, 1152, 1286
StyI	CCWWGG	2 cut(s)	17, 1041
TaaI	ACNGT	2 cut(s)	748, 861
TaqI	TCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	350, 539, 715, 750, 920
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	376, 404
Tru1I	TTAA	4 cut(s)	143, 261, 542, 714
Tru9I	TTAA	4 cut(s)	143, 261, 542, 714
TscAI	CASTG	2 cut(s)	415, 1054
TseFI	GTSAC	3 cut(s)	728, 999, 1026
TseI	GCWGC	6 cut(s)	326, 448, 476, 707, 803, 940
Tsp45I	GTSAC	3 cut(s)	728, 999, 1026
TspDTI	ATGAA	5 cut(s)	120, 147, 226, 580, 965
TspGWI	ACGGA	3 cut(s)	731, 749, 950
TspRI	CASTG	2 cut(s)	415, 1054
VneI	GTGCAC	1 cut(s)	1224
XagI	CCTNNNNNAGG	1 cut(s)	1151
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	1198
XspI	CTAG	4 cut(s)	18, 177, 395, 1127
Zsp2I	ATGCAT	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.