Rh2DG400000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Forward (+)
58222557 .. 58224887
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG400000.1

Sequence Viewer

Length: 1230 bp
ATGGAATGGAACAATAATTCGGGGTGGTTCCTTCTGTCCAACAACTCAGTATTTGCTCTTGGATTCTACCAAGGCCTTGATGTCGTTGATGTCAAGTCGTTTTTACTCGTGGTCTATCACTTGGGTGCATCTAAAGCGGTTTGGACTGCTAATAGAGGCATGCTGGTTGCTAATTTTGATAAGTTTGTCTTTGACAAAGATGGGAGTGTCTACTTGGAAAGCGGCGATGATAAGGTTTGGTCTACCAACACAACGGGAGAAGTAGTTACAGCCATGGAATTGCGGGATTCGGGAAACTTGGTGTTGCTTGGAGAGAAAGGAAGCATTCTTTGGCAGAGTTTTAGCCACCCAACTGATACTCTTTTACCGGGTCAGGAGTTCTTGGAAGGAATGAAACTCAAGAGCTTTCGGAACAAGAACAACTTGTCTAATTATCTTGAGATTCAGTCAGGCGAGTTGGTTCTTACTGGAGATTGTTTTCTGTTTGACCAGGTGGGAAGTTTCCAACGATCTCTTGGGAATGACACTGGTTATACTGCATATATGAAAGTCTTCGATGGAGACAGGAAATCAAACCGAAATGGAAGAACGCACGCACTTGTCGTTGTGGCCATTTTGATTGCAACAATCGTAGTTGTTGTTGGTCTACTTTATGTGGGATTTGGGTACTACCGAAAGAAGAAGAGATTATTGGAGTACTCTCAAGAAATCTTGGAAGAGGACAAGTTCTTGGACAGTCTGTCTGGAATGCCGATACGCTTCACATACAGTGATCTCTGCACAGCAACCAAGAATTTCTCCACAAAAATTGGCCAAGGAGGGTTTGGTTCAGTCTATCTAGCTGGAAAAAGGAACTTTGCTCCTGGGGAGAGTTCCGGGAAATCCCACTTTCCTTCTTATGCCTGTAGGCAGTTGGAAGAGGGCAACTTGAAAGAGTTCATTGATCCAAAGCTTGATATTGATGAAAATGATGAAAGAGTTGTGGCTGCAATCAATGTAGCATTATGGTGTATTCAGGATGAGATGCAAATGAGGCCTCCCATGACTAAGGTAGTTCAAATGCTTGAAGGTCTTTGTGATCTACCACCACCGCCTACATCCTCCCCAAAGTCGGTTTCTCATTTGAGTTTCTTACAATGGAGCAGCAAAGAAGCTAGTTCATCAGCAGGACTCAGTGACTACTATACTGATATACCCATGTCAGATGTTCGGCTCTCGGGGCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 Pkinase

Protein Analysis

409

Amino Acids

45.51

Weight (kDa)

5.32

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 47 - 128 1.4e-16 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 210, 242, 646
AciI CCGC 4 cut(s) 137, 222, 283, 1091
AclWI GGATC 1 cut(s) 938
AcoI YGGCCR 2 cut(s) 609, 811
AcsI RAATTY 1 cut(s) 793
AfaI GTAC 2 cut(s) 668, 698
AfiI CCNNNNNNNGG 1 cut(s) 1111
AgsI TTSAA 3 cut(s) 931, 1058, 1067
AhdI GACNNNNNGTC 1 cut(s) 739
AjnI CCWGG 2 cut(s) 489, 862
AjuI GAANNNNNNNTTGG 6 cut(s) 313, 345, 674, 706, 1099, 1131
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 4 cut(s) 405, 842, 952, 1154
AluI AGCT 4 cut(s) 405, 842, 952, 1154
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 1216
AoxI GGCC 5 cut(s) 73, 609, 811, 1034, 1220
ApeKI GCWGC 2 cut(s) 986, 1143
ApoI RAATTY 1 cut(s) 793
Asp700I GAANNNNTTC 2 cut(s) 551, 935
AspS9I GGNCC 1 cut(s) 1220
AsuC2I CCSGG 2 cut(s) 369, 877
AvaI CYCGRG 1 cut(s) 1216
BalI TGGCCA 2 cut(s) 611, 813
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 2 cut(s) 973, 1155
BccI CCATC 2 cut(s) 194, 551
BciT130I CCWGG 2 cut(s) 491, 864
BcnI CCSGG 2 cut(s) 369, 877
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 2 cut(s) 839, 1155
BfmI CTRYAG 1 cut(s) 904
BisI GCNGC 3 cut(s) 223, 987, 1144
BlsI GCNGC 3 cut(s) 224, 988, 1145
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 4 cut(s) 369, 491, 864, 877
BmeRI GACNNNNNGTC 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 1216
BmgT120I GGNCC 1 cut(s) 1220
BmiI GGNNCC 2 cut(s) 29, 1221
BmrFI CCNGG 4 cut(s) 369, 491, 864, 877
BmsI GCATC 2 cut(s) 137, 1014
BpiI GAAGAC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 3 cut(s) 383, 458, 687
BpuMI CCSGG 2 cut(s) 369, 877
BsaJI CCNNGG 5 cut(s) 70, 273, 814, 863, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 1111
Bse1I ACTGG 2 cut(s) 472, 532
BseBI CCWGG 2 cut(s) 491, 864
BseDI CCNNGG 5 cut(s) 70, 273, 814, 863, 1223
BseGI GGATG 2 cut(s) 1024, 1097
BseLI CCNNNNNNNGG 1 cut(s) 1111
BseMII CTCAG 2 cut(s) 60, 1186
BseNI ACTGG 2 cut(s) 472, 532
BseXI GCAGC 2 cut(s) 973, 1155
BsgI GTGCAG 1 cut(s) 763
BshFI GGCC 5 cut(s) 75, 611, 813, 1036, 1222
BsiHKCI CYCGRG 1 cut(s) 1216
BsiSI CCGG 2 cut(s) 368, 876
BslI CCNNNNNNNGG 1 cut(s) 1111
BsmAI GTCTC 1 cut(s) 555
BsmI GAATGC 2 cut(s) 324, 753
BsnI GGCC 5 cut(s) 75, 611, 813, 1036, 1222
BsoBI CYCGRG 1 cut(s) 1216
Bsp143I GATC 4 cut(s) 509, 772, 943, 1078
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 4 cut(s) 137, 222, 283, 1091
BspANI GGCC 5 cut(s) 75, 611, 813, 1036, 1222
BspCNI CTCAG 2 cut(s) 59, 1185
BspLI GGNNCC 2 cut(s) 29, 1221
BspPI GGATC 1 cut(s) 938
BsrI ACTGG 2 cut(s) 472, 532
BssECI CCNNGG 5 cut(s) 70, 273, 814, 863, 1223
BssMI GATC 4 cut(s) 509, 772, 943, 1078
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 4 cut(s) 70, 273, 814, 1223
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 491, 864
Bst4CI ACNGT 2 cut(s) 737, 770
Bst6I CTCTTC 3 cut(s) 677, 711, 912
BstC8I GCNNGC 2 cut(s) 161, 594
BstDEI CTNAG 3 cut(s) 46, 1047, 1172
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 1024, 1097
BstKTI GATC 4 cut(s) 512, 775, 946, 1081
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 4 cut(s) 509, 772, 943, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 134, 1033, 1219
BstNI CCWGG 2 cut(s) 491, 864
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 367, 489, 862, 875
BstSFI CTRYAG 1 cut(s) 904
BstV1I GCAGC 2 cut(s) 973, 1155
BstV2I GAAGAC 1 cut(s) 544
BsuRI GGCC 5 cut(s) 75, 611, 813, 1036, 1222
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 1024, 1097
BtsIMutI CAGTG 3 cut(s) 525, 775, 1180
Cac8I GCNNGC 2 cut(s) 161, 594
Cfr13I GGNCC 1 cut(s) 1220
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 2 cut(s) 667, 697
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 4 cut(s) 160, 274, 1042, 1198
CviQI GTAC 2 cut(s) 667, 697
DdeI CTNAG 3 cut(s) 46, 1047, 1172
DpnI GATC 4 cut(s) 511, 774, 945, 1080
DpnII GATC 4 cut(s) 509, 772, 943, 1078
DriI GACNNNNNGTC 1 cut(s) 739
EaeI YGGCCR 2 cut(s) 609, 811
Eam1104I CTCTTC 3 cut(s) 677, 711, 912
Eam1105I GACNNNNNGTC 1 cut(s) 739
EarI CTCTTC 3 cut(s) 677, 711, 912
Eco130I CCWWGG 4 cut(s) 70, 273, 814, 1223
Eco147I AGGCCT 2 cut(s) 75, 1036
Eco88I CYCGRG 1 cut(s) 1216
EcoRII CCWGG 2 cut(s) 489, 862
EcoT14I CCWWGG 4 cut(s) 70, 273, 814, 1223
ErhI CCWWGG 4 cut(s) 70, 273, 814, 1223
FaeI CATG 4 cut(s) 163, 277, 1045, 1201
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 407, 439
FatI CATG 4 cut(s) 159, 273, 1041, 1197
FauI CCCGC 1 cut(s) 276
FblI GTMKAC 3 cut(s) 210, 242, 646
Fnu4HI GCNGC 3 cut(s) 223, 987, 1144
FokI GGATG 2 cut(s) 1031, 1084
Fsp4HI GCNGC 3 cut(s) 223, 987, 1144
FspBI CTAG 2 cut(s) 839, 1155
GluI GCNGC 3 cut(s) 223, 987, 1144
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 5 cut(s) 75, 611, 813, 1036, 1222
HapII CCGG 2 cut(s) 368, 876
Hin1II CATG 4 cut(s) 163, 277, 1045, 1201
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 4 cut(s) 63, 287, 442, 1170
HpaII CCGG 2 cut(s) 368, 876
Hpy166II GTNNAC 3 cut(s) 211, 243, 647
Hpy188I TCNGA 2 cut(s) 411, 1204
Hpy188III TCNNGA 7 cut(s) 291, 374, 400, 437, 704, 744, 1016
Hpy8I GTNNAC 3 cut(s) 211, 243, 647
HpyAV CCTTC 4 cut(s) 41, 380, 903, 1061
HpyCH4III ACNGT 2 cut(s) 737, 770
HpyCH4V TGCA 6 cut(s) 128, 539, 623, 780, 989, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 1033, 1219
HpyF3I CTNAG 3 cut(s) 46, 1047, 1172
Hsp92II CATG 4 cut(s) 163, 277, 1045, 1201
Kzo9I GATC 4 cut(s) 509, 772, 943, 1078
LmnI GCTCC 2 cut(s) 865, 1140
Lsp1109I GCAGC 2 cut(s) 973, 1155
LweI GCATC 2 cut(s) 137, 1014
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 2 cut(s) 839, 1155
MaeIII GTNAC 2 cut(s) 265, 1175
MalI GATC 4 cut(s) 511, 774, 945, 1080
MboI GATC 4 cut(s) 509, 772, 943, 1078
MboII GAAGA 6 cut(s) 544, 597, 691, 694, 728, 929
MlsI TGGCCA 2 cut(s) 611, 813
MluCI AATT 6 cut(s) 16, 172, 278, 430, 793, 807
MluNI TGGCCA 2 cut(s) 611, 813
MlyI GAGTC 1 cut(s) 1164
MmeI TCCRAC 3 cut(s) 63, 529, 894
MnlI CCTC 7 cut(s) 149, 712, 812, 913, 1026, 1047, 1111
Mox20I TGGCCA 2 cut(s) 611, 813
MroXI GAANNNNTTC 2 cut(s) 551, 935
MscI TGGCCA 2 cut(s) 611, 813
MslI CAYNNNNRTG 2 cut(s) 123, 1006
Msp20I TGGCCA 2 cut(s) 611, 813
MspI CCGG 2 cut(s) 368, 876
MspR9I CCNGG 4 cut(s) 369, 491, 864, 877
Mva1269I GAATGC 2 cut(s) 324, 753
MvaI CCWGG 2 cut(s) 491, 864
MwoI GCNNNNNNNGC 3 cut(s) 134, 1033, 1219
NciI CCSGG 2 cut(s) 369, 877
NcoI CCATGG 1 cut(s) 273
NdeII GATC 4 cut(s) 509, 772, 943, 1078
NlaIII CATG 4 cut(s) 163, 277, 1045, 1201
NlaIV GGNNCC 2 cut(s) 29, 1221
NmuCI GTSAC 1 cut(s) 1175
NspI RCATGY 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 123
PaeI GCATGC 1 cut(s) 163
PceI AGGCCT 2 cut(s) 75, 1036
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PctI GAATGC 2 cut(s) 324, 753
PdmI GAANNNNTTC 2 cut(s) 551, 935
PfeI GAWTC 3 cut(s) 63, 287, 442
PfoI TCCNGGA 1 cut(s) 875
PkrI GCNGC 3 cut(s) 224, 988, 1145
PleI GAGTC 1 cut(s) 1164
PpsI GAGTC 1 cut(s) 1164
Psp6I CCWGG 2 cut(s) 489, 862
PspGI CCWGG 2 cut(s) 489, 862
PspN4I GGNNCC 2 cut(s) 29, 1221
PspPI GGNCC 1 cut(s) 1220
RsaI GTAC 2 cut(s) 668, 698
RsaNI GTAC 2 cut(s) 667, 697
RseI CAYNNNNRTG 2 cut(s) 123, 1006
SatI GCNGC 3 cut(s) 223, 987, 1144
Sau3AI GATC 4 cut(s) 509, 772, 943, 1078
Sau96I GGNCC 1 cut(s) 1220
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 1164
ScrFI CCNGG 4 cut(s) 369, 491, 864, 877
SetI ASST 9 cut(s) 237, 407, 495, 844, 954, 1053, 1072, 1156, 1229
SexAI ACCWGGT 1 cut(s) 489
SfaNI GCATC 2 cut(s) 137, 1014
SfcI CTRYAG 1 cut(s) 904
SmiMI CAYNNNNRTG 2 cut(s) 123, 1006
SmlI CTYRAG 3 cut(s) 398, 437, 702
SmoI CTYRAG 3 cut(s) 398, 437, 702
SphI GCATGC 1 cut(s) 163
Sse9I AATT 6 cut(s) 16, 172, 278, 430, 793, 807
SseBI AGGCCT 2 cut(s) 75, 1036
SsiI CCGC 4 cut(s) 137, 222, 283, 1091
SspMI CTAG 2 cut(s) 839, 1155
StuI AGGCCT 2 cut(s) 75, 1036
StyD4I CCNGG 4 cut(s) 367, 489, 862, 875
StyI CCWWGG 4 cut(s) 70, 273, 814, 1223
TaaI ACNGT 2 cut(s) 737, 770
TaqI TCGA 1 cut(s) 555
TasI AATT 6 cut(s) 16, 172, 278, 430, 793, 807
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 3 cut(s) 63, 287, 442
TscAI CASTG 3 cut(s) 532, 775, 1180
TseFI GTSAC 1 cut(s) 1175
TseI GCWGC 2 cut(s) 986, 1143
Tsp45I GTSAC 1 cut(s) 1175
TspDTI ATGAA 6 cut(s) 407, 560, 928, 978, 987, 1149
TspRI CASTG 3 cut(s) 532, 775, 1180
XapI RAATTY 1 cut(s) 793
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 2 cut(s) 512, 821
XmiI GTMKAC 3 cut(s) 210, 242, 646
XmnI GAANNNNTTC 2 cut(s) 551, 935
XspI CTAG 2 cut(s) 839, 1155
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.