Rh2DG410000
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Reverse (-)
59484496 .. 59487887
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG410000.1

Sequence Viewer

Length: 999 bp
ATGGCCACCGCAGCATTGCTCCGTTCACTACGCAGTCGTAATGTTGCAACCGCCTCCCTCTCTGCCTACCGCTCCGATGCCAACTTGACAATTAAGGATGTGGATGAGGTCCTTCTTGTTGGAGGAATGTCTCGTGTTCCCAAAGTGCAAGAGGTGGTGCAAGAGATATTCGGAAAAAGTGCAAGCAAAGGGGTCAATCCTGATGAGGCAGTTGCCTTGGGAGCAGCCATCCAAGGTGGTATCCTCCGTGGTGATGTTAAGGAGTTGCTTCTTCTTGATGTCACTCCTCTATCACTGGGCATTGAGACAATGGGTGGTATCTTCACCAAGCTGATTGCCAGGAACACAACAATTCCAACAAAGAAGAGTCAGGTCTTTTCGACAGCAGCTGACAACCAAACCCAAGTTGGTGTCAGGGTGCTACAAGGTGAGCGTGAAATGGCTTCTGACAACAAGCCCTTGGGAGAGTTTGAGCTCCGAGGCATTCCTCCAGCACTAAGAGGCATGCCTCAGATTGAAGTCACATTTGATATTGATGCCAATGGCATAGTTACCGTTTCTGCCAAGGACAAAGCCACTGGTAAAGAGCAACAGGTTACTATCAACAACACATCAGGTCGGCTCAGTGAAGACGAAATTGAGAGGATGGTCAAGGAAGCAGAGATGCACGCTCAGAGAGATCAGGAAAGGAAAGCTCTCGTTGATCTCAGAAACAGTGCAGAGACCAGCATCTACAGCATTGAGAACAGCTTAGACGAGTACCGTGACAAGGTTCCAAGTGAAACCGCTGAACAAATCGAGGATTCAGTTGCAGATTTGAGAAAGGCAATGGGAGAGGATAATGTGGATGAACTTAAGTCCAAGCTTGATGCTGCAAACAGAGCTGTCTCAAAGATTGGGGAGCACATGTCTGGTGGTTTTGGAGGTAGCTCCTCATCTGGTTCACAGGGTGGAGACCAGACTCCTGGGGCAGATTTCTACGAAGAAGCGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

332

Amino Acids

35.63

Weight (kDa)

4.92

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 24 - 303 6.1e-110 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 4 cut(s) 9, 51, 70, 786
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 1 cut(s) 769
AflII CTTAAG 1 cut(s) 854
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 1 cut(s) 518
AjnI CCWGG 2 cut(s) 338, 964
AluBI AGCT 8 cut(s) 331, 389, 475, 695, 750, 865, 884, 930
AluI AGCT 8 cut(s) 331, 389, 475, 695, 750, 865, 884, 930
Alw21I GWGCWC 2 cut(s) 477, 906
Alw26I GTCTC 5 cut(s) 135, 299, 716, 892, 948
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 11, 224, 386, 872
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 263, 316, 440
AvaII GGWCC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 477, 906
BbvI GCAGC 4 cut(s) 23, 236, 398, 859
BccI CCATC 2 cut(s) 236, 640
BciT130I CCWGG 2 cut(s) 340, 966
BciVI GTATCC 1 cut(s) 251
BcoDI GTCTC 5 cut(s) 135, 299, 716, 892, 948
BfmI CTRYAG 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 854
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 4 cut(s) 12, 225, 387, 873
BlsI GCNGC 4 cut(s) 13, 226, 388, 874
Bme1390I CCNGG 2 cut(s) 340, 966
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 774
BmrFI CCNGG 2 cut(s) 340, 966
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 5 cut(s) 67, 526, 654, 738, 859
BmuI ACTGGG 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 474
BsaI GGTCTC 2 cut(s) 716, 948
BsaJI CCNNGG 7 cut(s) 216, 232, 247, 459, 478, 564, 965
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse1I ACTGG 2 cut(s) 300, 583
Bse3DI GCAATG 2 cut(s) 14, 834
BseBI CCWGG 2 cut(s) 340, 966
BseDI CCNNGG 7 cut(s) 216, 232, 247, 459, 478, 564, 965
BseGI GGATG 5 cut(s) 103, 109, 228, 651, 853
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 2 cut(s) 14, 834
BseMII CTCAG 4 cut(s) 524, 637, 686, 721
BseNI ACTGG 2 cut(s) 300, 583
BseRI GAGGAG 2 cut(s) 276, 922
BseXI GCAGC 4 cut(s) 23, 236, 398, 859
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 477, 906
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 5 cut(s) 135, 299, 716, 892, 948
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 716, 948
Bsp1286I GDGCHC 2 cut(s) 477, 906
Bsp143I GATC 2 cut(s) 679, 703
BspACI CCGC 4 cut(s) 9, 51, 70, 786
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 523, 636, 685, 720
BspLI GGNNCC 1 cut(s) 774
BspTI CTTAAG 1 cut(s) 854
BspTNI GGTCTC 2 cut(s) 716, 948
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 14, 834
BsrI ACTGG 2 cut(s) 300, 583
BssECI CCNNGG 7 cut(s) 216, 232, 247, 459, 478, 564, 965
BssMI GATC 2 cut(s) 679, 703
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 4 cut(s) 216, 232, 459, 564
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 340, 966
Bst4CI ACNGT 3 cut(s) 556, 716, 764
Bst6I CTCTTC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 854
BstC8I GCNNGC 3 cut(s) 184, 506, 669
BstDEI CTNAG 6 cut(s) 497, 510, 623, 672, 707, 751
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 5 cut(s) 103, 109, 228, 651, 853
BstKTI GATC 2 cut(s) 682, 706
BstMAI GTCTC 5 cut(s) 135, 299, 716, 892, 948
BstMBI GATC 2 cut(s) 679, 703
BstMWI GCNNNNNNNGC 4 cut(s) 11, 221, 735, 881
BstNI CCWGG 2 cut(s) 340, 966
BstNSI RCATGY 2 cut(s) 508, 910
BstSCI CCNGG 2 cut(s) 338, 964
BstSFI CTRYAG 1 cut(s) 733
BstV1I GCAGC 4 cut(s) 23, 236, 398, 859
BstV2I GAAGAC 1 cut(s) 636
BstXI CCANNNNNNTGG 1 cut(s) 965
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 5 cut(s) 103, 109, 228, 651, 853
BtsIMutI CAGTG 4 cut(s) 293, 576, 631, 721
Cac8I GCNNGC 3 cut(s) 184, 506, 669
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 760
CviAII CATG 2 cut(s) 505, 907
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 6 cut(s) 497, 510, 623, 672, 707, 751
DpnI GATC 2 cut(s) 681, 705
DpnII GATC 2 cut(s) 679, 703
DraIII CACNNNGTG 1 cut(s) 950
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 4 cut(s) 216, 232, 459, 564
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 2 cut(s) 716, 948
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 338, 964
EcoT14I CCWWGG 4 cut(s) 216, 232, 459, 564
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 4 cut(s) 216, 232, 459, 564
FaeI CATG 2 cut(s) 508, 910
FaiI YATR 3 cut(s) 506, 548, 908
FatI CATG 2 cut(s) 504, 906
Fnu4HI GCNGC 4 cut(s) 12, 225, 387, 873
FokI GGATG 5 cut(s) 110, 116, 215, 658, 860
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 4 cut(s) 12, 225, 387, 873
GluI GCNGC 4 cut(s) 12, 225, 387, 873
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 508, 910
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 3 cut(s) 367, 803, 961
HphI GGTGA 3 cut(s) 263, 316, 440
Hpy166II GTNNAC 2 cut(s) 26, 944
Hpy188I TCNGA 7 cut(s) 76, 173, 448, 479, 513, 675, 710
Hpy188III TCNNGA 3 cut(s) 200, 275, 683
Hpy8I GTNNAC 2 cut(s) 26, 944
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 556, 716, 764
HpyCH4V TGCA 8 cut(s) 47, 148, 160, 182, 667, 719, 812, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 221, 735, 881
HpyF3I CTNAG 6 cut(s) 497, 510, 623, 672, 707, 751
Hsp92II CATG 2 cut(s) 508, 910
Kzo9I GATC 2 cut(s) 679, 703
LmnI GCTCC 6 cut(s) 24, 77, 221, 480, 901, 935
Lsp1109I GCAGC 4 cut(s) 23, 236, 398, 859
LweI GCATC 5 cut(s) 67, 526, 654, 738, 859
MaeIII GTNAC 5 cut(s) 280, 520, 550, 595, 764
MalI GATC 2 cut(s) 681, 705
MbiI CCGCTC 1 cut(s) 72
MboI GATC 2 cut(s) 679, 703
MboII GAAGA 5 cut(s) 263, 313, 376, 641, 995
MhlI GDGCHC 2 cut(s) 477, 906
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 90, 351, 636
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 376, 955
MmeI TCCRAC 2 cut(s) 100, 380
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 93, 258, 855
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 389, 788
MspCI CTTAAG 1 cut(s) 854
MspR9I CCNGG 2 cut(s) 340, 966
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 2 cut(s) 340, 966
MwoI GCNNNNNNNGC 4 cut(s) 11, 221, 735, 881
NdeII GATC 2 cut(s) 679, 703
NlaIII CATG 2 cut(s) 508, 910
NlaIV GGNNCC 1 cut(s) 774
NmuCI GTSAC 3 cut(s) 280, 520, 764
NspI RCATGY 2 cut(s) 508, 910
PaeI GCATGC 1 cut(s) 508
PciI ACATGT 1 cut(s) 906
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 803
PkrI GCNGC 4 cut(s) 13, 226, 388, 874
PleI GAGTC 2 cut(s) 375, 955
PpsI GAGTC 2 cut(s) 375, 955
PpuMI RGGWCCY 1 cut(s) 109
PscI ACATGT 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 338, 964
PspGI CCWGG 2 cut(s) 338, 964
PspN4I GGNNCC 1 cut(s) 774
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 3 cut(s) 93, 258, 855
SatI GCNGC 4 cut(s) 12, 225, 387, 873
Sau3AI GATC 2 cut(s) 679, 703
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 2 cut(s) 376, 955
ScrFI CCNGG 2 cut(s) 340, 966
SduI GDGCHC 2 cut(s) 477, 906
SfaNI GCATC 5 cut(s) 67, 526, 654, 738, 859
SfcI CTRYAG 1 cut(s) 733
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SphI GCATGC 1 cut(s) 508
Sse9I AATT 3 cut(s) 90, 351, 636
SsiI CCGC 4 cut(s) 9, 51, 70, 786
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 338, 964
StyI CCWWGG 4 cut(s) 216, 232, 459, 564
TaaI ACNGT 3 cut(s) 556, 716, 764
TaqI TCGA 2 cut(s) 380, 798
TasI AATT 3 cut(s) 90, 351, 636
TfiI GAWTC 1 cut(s) 803
Tru1I TTAA 3 cut(s) 93, 258, 855
Tru9I TTAA 3 cut(s) 93, 258, 855
TscAI CASTG 4 cut(s) 300, 583, 631, 721
TseFI GTSAC 3 cut(s) 280, 520, 764
TseI GCWGC 4 cut(s) 11, 224, 386, 872
Tsp45I GTSAC 3 cut(s) 280, 520, 764
TspDTI ATGAA 1 cut(s) 864
TspGWI ACGGA 2 cut(s) 11, 236
TspRI CASTG 4 cut(s) 300, 583, 631, 721
Vha464I CTTAAG 1 cut(s) 854
VpaK11BI GGWCC 1 cut(s) 109
XceI RCATGY 2 cut(s) 508, 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.