Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

61140369 .. 61145876

Gene Structure 5508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG421600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGCAGAAGCAAAAGTCTCTCTCTCTCGTTCTCCTCAGAAGAAGAGGAAGAAGAAGAAAGAAGAAACTTGTCCAACAGTCCGGATGGAGACTCTGACCATGCCGGAGGAGATGATGAGCGCCGTGTACTACCGGATGGAGAGAGCCTCCGGGCCCCACTTGTGGGGGCTCCGACTCAACGGCCTCTTATCTTCTTCGCATTCATCACCTTCGCCTCTTTCGCTTGGCTCTTCTGCCGCCGCCGCCGACCTACACGACTCCAACGCCGCCAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACGGCTTCCGGTACGACCACTGTGTGCGACATGATCATCCAGCAGTCGTTCTTGTCAATCAGGATTCATTTTACCGTGGTTTGACACCTGAGGAGTCTGAACGAGTCCATGAGTATAATTTTGATCATACTGTTGCATTTGACACCGAACAGATGTTAGAATGTGTTCAAAGGCTGAAGTGCGGGCAGTCTGTCCATGTTCCAATTTATGATTTTAAGATACATCGACGCTGTTCTGATACGTTTCGCCAGGTGAATGCTTCTGATATCTTTGTCGACACAGATGCTGATGTCAGAATTACTCGTAGAATAAGACGAGACACTGTTGAGAGGGGCAGGGATATTGACTCCGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCGTCAAAGAAGTACGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATTGATTTAATTGTACAACATATTCGGACAAAGCTTGGTCAGCATGATCTTTGCAAAATATATCCTAATGTATACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTAATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCGGATTGCCTAATTCGTCTGGTAATTTTTCTTTCACGCCTTACTCAAGTTTCCTTTATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

329

Amino Acids

38.62

Weight (kDa)

8.08

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	117 - 179	3.5e-06	Phosphoribulokinase / Uridine kinase family
PRK	PF00485	190 - 254	8.5e-20	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	579, 837
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	5 cut(s)	238, 241, 244, 268, 486
AcuI	CTGAAG	1 cut(s)	500
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	5 cut(s)	129, 305, 317, 722, 780
AfiI	CCNNNNNNNGG	3 cut(s)	163, 164, 746
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	1 cut(s)	799
AluI	AGCT	1 cut(s)	799
Alw26I	GTCTC	4 cut(s)	23, 84, 615, 882
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	741
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	153, 182
ApaI	GGGCCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	153, 154
AsuC2I	CCSGG	3 cut(s)	152, 742, 743
AsuHPI	GGTGA	2 cut(s)	199, 568
AvaI	CYCGRG	1 cut(s)	741
AxyI	CCTNAGG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	157, 172
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	80, 131
BceAI	ACGGC	3 cut(s)	108, 197, 322
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	3 cut(s)	337, 427, 732
BcnI	CCSGG	3 cut(s)	152, 742, 743
BcoDI	GTCTC	4 cut(s)	23, 84, 615, 882
BfmI	CTRYAG	1 cut(s)	986
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	5 cut(s)	238, 241, 244, 268, 276
BlsI	GCNGC	5 cut(s)	239, 242, 245, 269, 277
Bme1390I	CCNGG	4 cut(s)	152, 554, 742, 743
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	153, 154
BmiI	GGNNCC	3 cut(s)	155, 156, 171
BmrFI	CCNGG	4 cut(s)	152, 554, 742, 743
BmsI	GCATC	1 cut(s)	577
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	680, 954
BpuMI	CCSGG	3 cut(s)	152, 742, 743
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	4 cut(s)	379, 740, 741, 742
BsaWI	WCCGGW	3 cut(s)	82, 133, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 164, 746
Bse21I	CCTNAGG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	4 cut(s)	379, 740, 741, 742
BseGI	GGATG	3 cut(s)	91, 142, 340
BseLI	CCNNNNNNNGG	3 cut(s)	163, 164, 746
BseMII	CTCAG	2 cut(s)	51, 384
BseRI	GAGGAG	3 cut(s)	25, 123, 410
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	155, 184
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	6 cut(s)	83, 105, 134, 151, 313, 742
BslI	CCNNNNNNNGG	3 cut(s)	163, 164, 746
BsmAI	GTCTC	4 cut(s)	23, 84, 615, 882
BsmI	GAATGC	2 cut(s)	200, 565
BsnI	GGCC	2 cut(s)	155, 184
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	741
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	157, 172
Bsp13I	TCCGGA	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	4 cut(s)	337, 427, 732, 811
BspACI	CCGC	5 cut(s)	238, 241, 244, 268, 486
BspANI	GGCC	2 cut(s)	155, 184
BspCNI	CTCAG	2 cut(s)	50, 385
BspEI	TCCGGA	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	155, 156, 171
BspQI	GCTCTTC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	882
BsrGI	TGTACA	1 cut(s)	778
BssECI	CCNNGG	4 cut(s)	379, 740, 741, 742
BssMI	GATC	4 cut(s)	337, 427, 732, 811
BssNAI	GTATAC	1 cut(s)	838
Bst1107I	GTATAC	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	7 cut(s)	80, 326, 380, 436, 628, 849, 987
Bst6I	CTCTTC	2 cut(s)	39, 236
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	3 cut(s)	488, 687, 872
BstDEI	CTNAG	2 cut(s)	37, 393
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	91, 142, 340
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	340, 430, 735, 814
BstMAI	GTCTC	4 cut(s)	23, 84, 615, 882
BstMBI	GATC	4 cut(s)	337, 427, 732, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 243, 805
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	4 cut(s)	150, 552, 740, 741
BstSFI	CTRYAG	1 cut(s)	986
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	287
BstZ17I	GTATAC	1 cut(s)	838
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	155, 184
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	91, 142, 340
BtsIMutI	CAGTG	2 cut(s)	322, 624
Cac8I	GCNNGC	3 cut(s)	488, 687, 872
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	153, 154
Cfr9I	CCCGGG	1 cut(s)	741
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	5 cut(s)	128, 304, 316, 721, 779
CviAII	CATG	8 cut(s)	101, 335, 413, 500, 758, 809, 871, 908
CviQI	GTAC	5 cut(s)	128, 304, 316, 721, 779
DdeI	CTNAG	2 cut(s)	37, 393
DpnI	GATC	4 cut(s)	339, 429, 734, 813
DpnII	GATC	4 cut(s)	337, 427, 732, 811
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	39, 236
EarI	CTCTTC	2 cut(s)	39, 236
Eco24I	GRGCYC	2 cut(s)	157, 172
Eco31I	GGTCTC	1 cut(s)	882
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	1 cut(s)	571
EcoT22I	ATGCAT	1 cut(s)	876
EcoT38I	GRGCYC	2 cut(s)	157, 172
FaeI	CATG	8 cut(s)	104, 338, 416, 503, 761, 812, 874, 911
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	8 cut(s)	100, 334, 412, 499, 757, 808, 870, 907
FauI	CCCGC	1 cut(s)	479
FbaI	TGATCA	3 cut(s)	337, 427, 732
FblI	GTMKAC	2 cut(s)	579, 837
Fnu4HI	GCNGC	5 cut(s)	238, 241, 244, 268, 276
FokI	GGATG	3 cut(s)	98, 149, 327
FriOI	GRGCYC	2 cut(s)	157, 172
Fsp4HI	GCNGC	5 cut(s)	238, 241, 244, 268, 276
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	238, 241, 244, 268, 276
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	155, 184
HapII	CCGG	6 cut(s)	83, 105, 134, 151, 313, 742
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	8 cut(s)	104, 338, 416, 503, 761, 812, 874, 911
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	7 cut(s)	92, 175, 258, 368, 398, 408, 650
HpaII	CCGG	6 cut(s)	83, 105, 134, 151, 313, 742
HphI	GGTGA	2 cut(s)	199, 568
Hpy166II	GTNNAC	4 cut(s)	128, 580, 838, 852
Hpy188III	TCNNGA	5 cut(s)	83, 298, 365, 659, 887
Hpy8I	GTNNAC	4 cut(s)	128, 580, 838, 852
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	2 cut(s)	220, 290
HpyCH4III	ACNGT	7 cut(s)	80, 326, 380, 436, 628, 849, 987
HpyCH4IV	ACGT	2 cut(s)	545, 840
HpyCH4V	TGCA	4 cut(s)	6, 440, 819, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 243, 805
HpyF3I	CTNAG	2 cut(s)	37, 393
HpySE526I	ACGT	2 cut(s)	545, 840
Hsp92II	CATG	8 cut(s)	104, 338, 416, 503, 761, 812, 874, 911
HspAI	GCGC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	82
Ksp22I	TGATCA	3 cut(s)	337, 427, 732
Kzo9I	GATC	4 cut(s)	337, 427, 732, 811
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	2 cut(s)	545, 840
MalI	GATC	4 cut(s)	339, 429, 734, 813
MboI	GATC	4 cut(s)	337, 427, 732, 811
MboII	GAAGA	9 cut(s)	53, 56, 62, 65, 68, 75, 184, 187, 223
MhlI	GDGCHC	2 cut(s)	157, 172
MluCI	AATT	7 cut(s)	421, 507, 600, 774, 882, 936, 948
MlyI	GAGTC	6 cut(s)	86, 169, 252, 407, 417, 644
MmeI	TCCRAC	3 cut(s)	99, 197, 286
Mph1103I	ATGCAT	1 cut(s)	876
MroI	TCCGGA	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	519, 773
MspI	CCGG	6 cut(s)	83, 105, 134, 151, 313, 742
MspR9I	CCNGG	4 cut(s)	152, 554, 742, 743
Mva1269I	GAATGC	2 cut(s)	200, 565
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	221, 243, 805
NciI	CCSGG	3 cut(s)	152, 742, 743
NdeII	GATC	4 cut(s)	337, 427, 732, 811
NlaIII	CATG	8 cut(s)	104, 338, 416, 503, 761, 812, 874, 911
NlaIV	GGNNCC	3 cut(s)	155, 156, 171
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	1 cut(s)	874
PaeI	GCATGC	1 cut(s)	874
PciSI	GCTCTTC	1 cut(s)	236
PctI	GAATGC	2 cut(s)	200, 565
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	5 cut(s)	239, 242, 245, 269, 277
PleI	GAGTC	6 cut(s)	86, 169, 252, 406, 416, 644
PpsI	GAGTC	6 cut(s)	86, 169, 252, 406, 416, 644
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	155, 156, 171
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	153, 154
PstNI	CAGNNNCTG	1 cut(s)	590
RsaI	GTAC	5 cut(s)	129, 305, 317, 722, 780
RsaNI	GTAC	5 cut(s)	128, 304, 316, 721, 779
SalI	GTCGAC	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	519, 773
SatI	GCNGC	5 cut(s)	238, 241, 244, 268, 276
Sau3AI	GATC	4 cut(s)	337, 427, 732, 811
Sau96I	GGNCC	2 cut(s)	153, 154
SchI	GAGTC	6 cut(s)	86, 169, 252, 407, 417, 644
ScrFI	CCNGG	4 cut(s)	152, 554, 742, 743
SduI	GDGCHC	2 cut(s)	157, 172
SetI	ASST	8 cut(s)	212, 253, 305, 394, 548, 558, 801, 843
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	986
SmaI	CCCGGG	1 cut(s)	743
SmlI	CTYRAG	2 cut(s)	659, 969
SmoI	CTYRAG	2 cut(s)	659, 969
SphI	GCATGC	1 cut(s)	874
Sse9I	AATT	7 cut(s)	421, 507, 600, 774, 882, 936, 948
SsiI	CCGC	5 cut(s)	238, 241, 244, 268, 486
StyD4I	CCNGG	4 cut(s)	150, 552, 740, 741
TaaI	ACNGT	7 cut(s)	80, 326, 380, 436, 628, 849, 987
TaiI	ACGT	2 cut(s)	548, 843
TaqI	TCGA	3 cut(s)	529, 579, 886
TaqII	GACCGA	1 cut(s)	906
TasI	AATT	7 cut(s)	421, 507, 600, 774, 882, 936, 948
TatI	WGTACW	2 cut(s)	127, 778
TauI	GCSGC	4 cut(s)	240, 243, 246, 270
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	519, 773
Tru9I	TTAA	2 cut(s)	519, 773
TscAI	CASTG	2 cut(s)	329, 631
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	193, 360
TspGWI	ACGGA	1 cut(s)	643
TspMI	CCCGGG	1 cut(s)	741
TspRI	CASTG	2 cut(s)	329, 631
XceI	RCATGY	1 cut(s)	874
XmaI	CCCGGG	1 cut(s)	741
XmiI	GTMKAC	2 cut(s)	579, 837
XmnI	GAANNNNTTC	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.